PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g21460.1.p

Common Name

BRADI_3g21460, LOC100821626

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 308aa MW: 33550.8 Da PI: 4.8169

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g21460.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.7e-10	129	175	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h + ErrRR+++ + f++L +++P a K +K++ L A++Y+++L+ Bradi3g21460.1.p 129 EHVASERRRREKMHHQFATLASIIPDiA------KTDKVSLLGSAIQYVHKLE 175 69999*******************88......*************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.649	125	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-8	129	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-15	129	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-14	130	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.82E-10	130	179	No hit	No description
SMART	SM00353	1.6E-12	131	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDSSSNQWLT ELENVELVEN LDLVDEISMQ QLAESLAEEL IPRDDQPHHK SLMPSLAAGI 60 PFTGGFNNST ESFPTGANSV FSFSDGSSVS SLNFSTPLEP PTTGGSYYCP SPSSEKRLSG 120 RRTSLSIQEH VASERRRREK MHHQFATLAS IIPDIAKTDK VSLLGSAIQY VHKLEEKLKA 180 LKEHQSTVST AESAPMFDVH CCIGNTGDGK EDDCEKGENS SVRPKIEVNV RGTTVLLQIA 240 CREKKGVLIM VLTELEKHGL SIMNTSVVPF GDDDLSSLNI IITAEIENGS CTTAELLKNL 300 NLAIRNF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	138	ERRRRE
2	134	139	RRRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g21460.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024318240.1	0.0	transcription factor bHLH18 isoform X1
Refseq	XP_024318241.1	0.0	transcription factor bHLH18 isoform X1
Refseq	XP_024318242.1	0.0	transcription factor bHLH18 isoform X1
TrEMBL	I1I331	0.0	I1I331_BRADI; Uncharacterized protein
STRING	BRADI3G21460.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13896	17	25
Representative plant	OGRP12982	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22750.1	3e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi3g21460.1.p
Entrez Gene	100821626