PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g20603.1.p
Common NameBRADI_3g20603
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 574aa    MW: 66234.5 Da    PI: 6.3481
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g20603.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.92.5e-21117237290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................................tekerrtraetrtg 61 
                        Yn+YA +vGFs+r s+s++s  ++e+ k+ fvC+k  k++ + +                                  + k+rr+++ + t+
  Bradi3g20603.1.p 117 HYNAYALRVGFSIRSSTSRRSLYTNEVEKQLFVCNKFRKPKADGEPtkkakvapdvsshsevgseeetdreedlpigkkAPKKRRRETIKGTN 209
                       6************************************9999988778899***************************988889999999**** PP

              FAR1  62 CkaklkvkkekdgkwevtkleleHnHela 90 
                       Cka++ vk+  d+kw+v+ +  eHnH+l 
  Bradi3g20603.1.p 210 CKARMIVKLV-DSKWQVIYFIAEHNHPLI 237
                       **********.9***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-19117237IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.31477513IPR007527Zinc finger, SWIM-type
PfamPF044344.2E-4483512IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-4488515IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MDLLDLNELP TDLVDEGVAT TGFPSYCTQP APGNEVREEV HNEVNDGSSH NGSLHIVGRE  60
DQAGQLDSTD LNPQTISISD YDDDINDEQF PEDGVLSQPH EPYLGMRFDT LLCAKDHYNA  120
YALRVGFSIR SSTSRRSLYT NEVEKQLFVC NKFRKPKADG EPTKKAKVAP DVSSHSEVGS  180
EEETDREEDL PIGKKAPKKR RRETIKGTNC KARMIVKLVD SKWQVIYFIA EHNHPLITKP  240
SFTKYLRSHQ GIPKEEENFL RILHNSNLET GRMMPLMSSF YGSGLLVPYT TKAISNYQSR  300
MHAQTRGGDM AETISYFTQK RLDDPDFYFN VLLDDEQRGW AEMMETHQVA GNKYIAWLYN  360
IRATWVPCYF RNCFFPFLQS TQRSEGFNAV LKRYVNPHNS SLNFVHQYEK IQLKILVKEG  420
GNDYRTDHLH VDTWSHIQQF RSEFEMIGRY NVRPLQNDIY ELIPNRKYCC NYGTRTYKVT  480
PRVDEASYSC ECCKFQKDGL LCCHILKIFT HCSIDEIPQH YILTRWTQQA IREEVAPEQD  540
QPDVMSKESE KEIRLANMSV ELQKVARKAC GSDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g20603.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312602.11e-175protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0Q3I6840.0A0A0Q3I684_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI1G10750.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7287518
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.13e-21FAR1-related sequence 1