PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g19710.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 273aa    MW: 27832.1 Da    PI: 9.7014
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g19710.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000193115123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C + F ++  L  H++ H
  Bradi3g19710.1.p  93 FKCNYCQRKFYTSQALGGHQNAH 115
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.23E-790120No hitNo description
Gene3DG3DSA:3.30.160.608.8E-491119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.57293120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEMGSSSRTA SMEVVEEGEE VQAQAAKEEQ EKAPAAPSPA LELNLLGGLG SASASASASA  60
SAADKGKGKA VAAPSVEQKA AAAAGENNKR RMFKCNYCQR KFYTSQALGG HQNAHKRERS  120
IAKRAAAGRG AGGFYGGAVP DSTAMIPHHL RFPNLWPYTA AGRALLGGAR GPTSAVGPYY  180
GMHMNHQPSF YAGASLAARG YNQMPGEGYG GYGYGRALFP EAAAAAPVNG IRWAAAGTTG  240
AGGGVVINEG AVNNKEEIPG SSSSKLDLTL KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g19710.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-42HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189195.15e-52zinc finger protein 6-like
TrEMBLA0A0Q3F9770.0A0A0Q3F977_BRADI; Uncharacterized protein
STRINGBRADI3G19710.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.13e-14zinc-finger protein 1