PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g18810.5.p

Common Name

BRADI_3g18810, LOC100822552

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Protein Properties

Length: 176aa MW: 19431.4 Da PI: 5.2785

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g18810.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.8	4.5e-14	61	150	2	96
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 +++s+v k +l +p +f ++ +++++ + t +g+sW + + r+ ++ l Wk+F+ +n+L+++D ++F+l++ e+elv Bradi3g18810.5.p 61 TMLMSRSHVQKPFQLGIPSRF--RYHLPEAC--KATTLICRGKSWPMSY--RGDLKMKKLDVAWKDFAVDNRLQVNDACIFELVNGaGEEELV 147 55678999***********..57778777..46666679****..99999999*********************99776999998 PP EEE CS B3 94 vkv 96 ++v Bradi3g18810.5.p 148 FQV 150 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.9E-17	54	154	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-15	55	149	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.82E-17	58	154	No hit	No description
SMART	SM01019	0.0014	60	156	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.039	60	156	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.7E-13	60	150	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
METPACPSKQ LPDVHVIKTI LEPCEDSPEP APAPAPALYP APDATEDWET TPLSGNHPFF 60 TMLMSRSHVQ KPFQLGIPSR FRYHLPEACK ATTLICRGKS WPMSYRGDLK MKKLDVAWKD 120 FAVDNRLQVN DACIFELVNG AGEEELVFQV QILRGGLPKE VVSKGATADE PMIIN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g18810.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010234506.1	1e-127	B3 domain-containing protein Os06g0112300 isoform X1
Refseq	XP_010234507.1	1e-128	B3 domain-containing protein Os06g0112300 isoform X2
Swissprot	Q9LHY9	2e-46	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	A0A0Q3JBP9	1e-126	A0A0Q3JBP9_BRADI; Uncharacterized protein
TrEMBL	A0A2K2CY44	1e-127	A0A2K2CY44_BRADI; Uncharacterized protein
TrEMBL	I1I286	1e-128	I1I286_BRADI; Uncharacterized protein
STRING	BRADI3G18807.1	1e-128	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	6e-09	B3 family protein

Link Out ? help Back to Top
Phytozome	Bradi3g18810.5.p
Entrez Gene	100822552

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]