PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g18810.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 229aa    MW: 25579.5 Da    PI: 5.3461
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g18810.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.98.9e-14114203296
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                          +++s+v k  +l +p +f  ++ +++++  + t    +g+sW + +  r+  ++  l   Wk+F+ +n+L+++D ++F+l++   e+elv
  Bradi3g18810.2.p 114 TMLMSRSHVQKPFQLGIPSRF--RYHLPEAC--KATTLICRGKSWPMSY--RGDLKMKKLDVAWKDFAVDNRLQVNDACIFELVNGaGEEELV 200
                       55678999*************..57778777..46666679********..99999999***********************99776999999 PP

                       EEE CS
                B3  94 vkv 96 
                       ++v
  Bradi3g18810.2.p 201 FQV 203
                       876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-16107207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-15108202IPR015300DNA-binding pseudobarrel domain
CDDcd100176.71E-17111207No hitNo description
PROSITE profilePS5086311.039113209IPR003340B3 DNA binding domain
PfamPF023621.9E-12113203IPR003340B3 DNA binding domain
SMARTSM010190.0014113209IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MFEYIPVYIL SKRYELRNGL LQDVDRCEQI VQPRCAESPE IHVPPSLPVH SAQMETPACP  60
SKQLPDVHVI KTILEPCEDS PEPAPAPAPA LYPAPDATED WETTPLSGNH PFFTMLMSRS  120
HVQKPFQLGI PSRFRYHLPE ACKATTLICR GKSWPMSYRG DLKMKKLDVA WKDFAVDNRL  180
QVNDACIFEL VNGAGEEELV FQVQILRGGL PKEVVSKGAT ADEPMIIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g18810.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234507.11e-152B3 domain-containing protein Os06g0112300 isoform X2
SwissprotQ9LHY97e-46Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBLA0A2K2CY441e-169A0A2K2CY44_BRADI; Uncharacterized protein
STRINGBRADI3G18807.11e-128(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-08B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]