PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g18810.1.p
Common NameBRADI_3g18810, LOC100822552
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 319aa    MW: 34748.4 Da    PI: 5.7151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g18810.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-13204293296
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                          +++s+v k  +l +p +f  ++ +++++  + t    +g+sW + +  r+  ++  l   Wk+F+ +n+L+++D ++F+l++   e+elv
  Bradi3g18810.1.p 204 TMLMSRSHVQKPFQLGIPSRF--RYHLPEAC--KATTLICRGKSWPMSY--RGDLKMKKLDVAWKDFAVDNRLQVNDACIFELVNGaGEEELV 290
                       55678999*************..57778777..46666679********..99999999***********************99776999999 PP

                       EEE CS
                B3  94 vkv 96 
                       ++v
  Bradi3g18810.1.p 291 FQV 293
                       876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-16197297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-15198291IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-16201297No hitNo description
SMARTSM010190.0014203299IPR003340B3 DNA binding domain
PfamPF023623.9E-12203293IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039203299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTAASTETLH GGGDAATDAE EGPLSRELRQ LPDQVLQERL QRMQGLVDVG FAARLPDGGK  60
TYHHTLHAVR HELDRRRQQA AAASCSAPPP PPSPEHAPAP PTPHGPQGEL PTDVDRCEQI  120
VQPRCAESPE IHVPPSLPVH SAQMETPACP SKQLPDVHVI KTILEPCEDS PEPAPAPAPA  180
LYPAPDATED WETTPLSGNH PFFTMLMSRS HVQKPFQLGI PSRFRYHLPE ACKATTLICR  240
GKSWPMSYRG DLKMKKLDVA WKDFAVDNRL QVNDACIFEL VNGAGEEELV FQVQILRGGL  300
PKEVVSKGAT ADEPMIIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g18810.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234507.10.0B3 domain-containing protein Os06g0112300 isoform X2
TrEMBLA0A0Q3JBP90.0A0A0Q3JBP9_BRADI; Uncharacterized protein
STRINGBRADI3G18807.11e-127(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933
Representative plantOGRP7665916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-08B3 family protein