PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g18800.1.p | ||||||||
Common Name | BRADI_3g18800, LOC100822241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WOX | ||||||||
Protein Properties | Length: 243aa MW: 26441.9 Da PI: 7.7621 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.3 | 8.5e-16 | 26 | 86 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNrR + ++ Bradi3g18800.1.p 26 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 86 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 105.1 | 4.5e-34 | 25 | 87 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++ Bradi3g18800.1.p 25 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 87 689**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.499 | 22 | 87 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-9 | 23 | 94 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.27E-13 | 24 | 93 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.2E-5 | 24 | 91 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.8E-13 | 26 | 86 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MDHQQHHSQA PTQRAGCGEG AEPAARSRWA PKPEQILILE SIFNSGMVNP AKDETARIRR 60 LLERFGAVRD ANVFYWFQNR RSRSRRRARQ LQHQAQLHQL PSAPHGIMHY GQLSCGGGGV 120 MSPAAAPVAS APAPTAGPHL LADVVGAGDD DLFAIPRQMG LMDHRYTETS QLTYQQPGTI 180 QVFINGAAYD VPSAGPLDLA GTFGHDVMLV HSSGEILPVN EHGVLMKNLQ MGECYYMVSR 240 SI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g18800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005249 | 2e-96 | AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21. | |||
GenBank | AP014964 | 2e-96 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 2e-96 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571573.1 | 0.0 | WUSCHEL-related homeobox 10 | ||||
Swissprot | Q6Z3L4 | 5e-89 | WOX10_ORYSJ; WUSCHEL-related homeobox 10 | ||||
TrEMBL | I1I285 | 1e-179 | I1I285_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G18800.1 | 1e-180 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1078 | 37 | 109 | Representative plant | OGRP4697 | 12 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 1e-31 | WUSCHEL related homeobox 11 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g18800.1.p |
Entrez Gene | 100822241 |
Publications ? help Back to Top | |||
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