PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g17170.3.p | ||||||||
Common Name | BRADI_3g17170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 275aa MW: 29837 Da PI: 10.8848 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 9e-15 | 94 | 138 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky Bradi3g17170.3.p 94 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 138 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.968 | 87 | 143 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-18 | 88 | 143 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-18 | 90 | 142 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-11 | 91 | 141 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-12 | 94 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-10 | 94 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-12 | 94 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MPQDSRPAGM RLFGVTIAPA PDPPDHRDPN PPVPVREDVM RKCKSMGNLA ALASASASGD 60 AGGAAAADGY LSDGGLLQSS GKRRRAQERK KAVPWTEEEH RTFLAGLEKL GKGDWRGIAK 120 NFVTTRTPTQ VASHAQKYFL RQTNPNKKKR RSSLFDMMAS DLSPAPNCPI LPPTMAKLHE 180 MVAMTKQLQN SNLEGVSSSN AANVASQVGR DLPPPVPSFK ATNLDTSLVK TNRMECFSRT 240 HFSFRQIPMI AEGTSSTSIT PTANIIQRRT RIWS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 150 | KKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g17170.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951947 | 0.0 | JF951947.1 Triticum aestivum clone TaMYB64 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024318074.1 | 0.0 | transcription factor MYBS2 isoform X1 | ||||
TrEMBL | A0A0Q3F7N8 | 0.0 | A0A0Q3F7N8_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G17170.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 4e-37 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g17170.3.p |