PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g16140.3.p

Common Name

LOC100844785

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GeBP

Protein Properties

Length: 371aa MW: 41422.3 Da PI: 5.4559

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g16140.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	29.9	1.5e-09	174	261	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 +++r+w ++De+++L + +f +++ p ++f+e + ++++ + + +++ +K+++LK+++ +v +++h++ +ls+ Bradi3g16140.3.p 174 KVRRVWYNKDEVLILNEIHNFLLERKRLPELKENDFFESILEQLEDDSCDiRNVKDKMKSLKRRYDAHVVS---------TTNHERLLDNLSE 257 679***************************************99876527899********999887.........7888888888888 PP DUF573 94 kiWg 97 kiWg Bradi3g16140.3.p 258 KIWG 261 8887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.3E-9	176	261	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MKHKRSRKTA SGSKGSVDSG SSLVAVEPQI DNKPPPPEQD IEGSRSDQDR APTDGAVAGE 60 EEEDGYISSS DLEPPPSASS PVVSQEDDDE DESPDNGHEG DMQPQRMKRS RSNDAPGPNP 120 QPNKKKRDTA SDQPEVPALD QEAEDEGPHG PKEIRPASPH QPGERGVWFG KVEKVRRVWY 180 NKDEVLILNE IHNFLLERKR LPELKENDFF ESILEQLEDD SCDIRNVKDK MKSLKRRYDA 240 HVVSTTNHER LLDNLSEKIW GPRSSNNAVA GYKNEDKISL VEAEKKFEEM YPLLAQEVKL 300 IADEDPSAKS LCIGLDAETA LSIEKRLGKI KGAELKLQKR MEAKVISPKA MVRKKLARLG 360 EKVAKKVRRS *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MKHKRSRKTA SGSKGSVDSG SSLVAVEPQI DNKPPPPEQD IEGSRSDQDR APTDGAVAGE  60
EEEDGYISSS DLEPPPSASS PVVSQEDDDE DESPDNGHEG DMQPQRMKRS RSNDAPGPNP  120
QPNKKKRDTA SDQPEVPALD QEAEDEGPHG PKEIRPASPH QPGERGVWFG KVEKVRRVWY  180
NKDEVLILNE IHNFLLERKR LPELKENDFF ESILEQLEDD SCDIRNVKDK MKSLKRRYDA  240
HVVSTTNHER LLDNLSEKIW GPRSSNNAVA GYKNEDKISL VEAEKKFEEM YPLLAQEVKL  300
IADEDPSAKS LCIGLDAETA LSIEKRLGKI KGAELKLQKR MEAKVISPKA MVRKKLARLG  360
EKVAKKVRRS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g16140.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003571446.1	0.0	probable transcription factor At4g00610
TrEMBL	I1I1A8	0.0	I1I1A8_BRADI; Uncharacterized protein
STRING	BRADI3G16140.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00610.1	2e-06	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Bradi3g16140.3.p
Entrez Gene	100844785