PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g12565.1.p
Common NameBRADI_3g12565, LOC100829710
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 124aa    MW: 13817.2 Da    PI: 9.0484
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g12565.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.8e-201162155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++y+GVr+++ +g+++AeIrd      ++ r++lg+f+taeeAa+a+++ + +++g
  Bradi3g12565.1.p 11 TKYRGVRRRP-SGKYAAEIRDS---SrQSVRVWLGTFDTAEEAARAYDRSAYNMRG 62
                      69********.7*********3...2236*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-151162IPR001471AP2/ERF domain
CDDcd000181.50E-261171No hitNo description
SMARTSM003804.0E-321276IPR001471AP2/ERF domain
PROSITE profilePS5103222.6421270IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-221271IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.0E-301271IPR001471AP2/ERF domain
PRINTSPR003672.8E-101324IPR001471AP2/ERF domain
PRINTSPR003672.8E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MDGDQGGGEA TKYRGVRRRP SGKYAAEIRD SSRQSVRVWL GTFDTAEEAA RAYDRSAYNM  60
RGQLAVLNFP AEARNYVRGG SSSSSRQQQQ QQQVIELECL DDEVLQEMLR DDPQRRSAGG  120
KKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-3241042114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g12565.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0090603e-41BT009060.1 Triticum aestivum clone wdr1f.pk003.l5:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571268.13e-85ethylene-responsive transcription factor 14
SwissprotQ9LTC55e-33ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLI1I0308e-84I1I030_BRADI; Uncharacterized protein
STRINGBRADI3G12565.11e-84(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.12e-32ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]