PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g11520.1.p

Common Name

BRADI_3g11520, LOC100833498

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 331aa MW: 36688.7 Da PI: 6.7793

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g11520.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.2	1.9e-10	40	89	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rEr RRd++N+ f+eL + l ++ ++++Ka+iL +++ +k+L Bradi3g11520.1.p 40 RKVQKADRERMRRDKLNEQFQELGTTLDPD----RPRNDKATILGDTIQMLKDL 89 5677889******************997....799************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.976	39	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-12	40	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.80E-7	40	93	No hit	No description
SuperFamily	SSF47459	4.19E-13	40	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-8	40	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-8	45	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MDPRPHKPQD DRYFHQHDGA CHADPSQRAE CKAQGLVTVR KVQKADRERM RRDKLNEQFQ 60 ELGTTLDPDR PRNDKATILG DTIQMLKDLS SQVNKLKAEY SSLSEEEREL TQEKNELRDE 120 KASLKSDIDN LNTQYQQRIR MLYPWTGMEP SVVIGPPPSY PFPVPVPIPT GAVPMHPQLQ 180 AYPFFRNQTL GTVPNPCTPY MAYTQPCHPD QPSNQFSTPV PRSSSNQSHS PAQDHRSKSC 240 TLQQTSCGRR SDDFGDVATD LELKTPGSSA PSHSEIAKKD SSSDLKKKKQ CINQINGSIL 300 TEGSSSSRCS SSGPPDVSNS VGDGSVPDDQ *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g11520.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003573201.1	0.0	transcription factor bHLH121 isoform X2
Swissprot	Q9LT23	8e-70	BH121_ARATH; Transcription factor bHLH121
TrEMBL	I1HZY6	0.0	I1HZY6_BRADI; Uncharacterized protein
STRING	BRADI3G11520.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11767	25	29
Representative plant	OGRP3401	14	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	1e-59	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi3g11520.1.p
Entrez Gene	100833498

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]