PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g10422.4.p
Common NameBRADI_3g10422
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 740aa    MW: 85934.3 Da    PI: 7.2343
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g10422.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.92.9e-17132213191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       +fY+++A  +GF +r+ +++++      +k +  C+++gk ++ ++   +++r+++    +C+ak+ vk++ +++we+t +++eHnH+l+p
  Bradi3g10422.4.p 132 RFYSTHALLTGFAIRRGSNYRR------KKFHILCNRSGKLKPIQHM--QRKRKSNAMGSQCRAKVIVKLT-NEEWEITAVRSEHNHPLCP 213
                       5********************9......456799*********9887..88888888999***********.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-14132213IPR004330FAR1 DNA binding domain
PfamPF105516.6E-33335428IPR018289MULE transposase domain
PROSITE profilePS509669.025617653IPR007527Zinc finger, SWIM-type
SMARTSM005750.0085628655IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MTDPGQVAES NHSGAEQLEG KEPVGKQAMP EGRLQPIGEN YQEQASNVDT ITEGLLTDKS  60
DKAEEQDHSH DIAEWNEMSS NDTSSGSDSD SSSGSELDTE LGKSFYPSFE ALENSRPPEV  120
GMKFPTLEDA ERFYSTHALL TGFAIRRGSN YRRKKFHILC NRSGKLKPIQ HMQRKRKSNA  180
MGSQCRAKVI VKLTNEEWEI TAVRSEHNHP LCPRPSLTRF FLNHRYLSTE EKSFLRVLQQ  240
SRINPKKAMK IFRRMRSNFR NIPSKEKDMS NLQCLEQWRK ENSDVETALK RFKELELRNL  300
GFSYTMQTDE DNIVRSLFWT DARSRVDYEI FGDFVSFDTT YSTNRHNMPF APIVGMNNHG  360
RTLVFGCALL QDQKTETFKW MFQTFLHVMG GKMPRAIITD QDEGMSKAIS EVMPQVKHRL  420
CKFNVMQKAR EKLEVFMAAR GNMNAELHGF VDNSLTEQEF EDAWAELIEK YDAGENEHLR  480
LMWETRKNWA PVYFRAHFYP FVESTGHHEG ANLLFKENVL PKDRIEKFIE QYERIQENIV  540
KTDEDDILQS GTEPAYFSYQ PIEKHAAHIY TRQIFLRIQK ELFYSTAFNV HEIQGGSVYR  600
LEKVCNYENP EVDRNSFEVL VEAGTFAFKC QCAKFTRDGI LCCHIFRVFT QLGINEIPAQ  660
YILPRWTHRF KEEQLKEYKD KCLKKTENTA RYAMLMTKMA DIGKGISMDG AKCSCFMHEL  720
DKIQERLATT GDIRRKSWK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177QRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g10422.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755557.10.0protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A0Q3F4K20.0A0A0Q3F4K2_BRADI; Uncharacterized protein
STRINGBRADI3G10422.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.28e-84FAR1-related sequence 3