PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g10422.3.p | ||||||||
Common Name | BRADI_3g10422 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 740aa MW: 85934.3 Da PI: 7.2343 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.9 | 2.9e-17 | 132 | 213 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+++A +GF +r+ +++++ +k + C+++gk ++ ++ +++r+++ +C+ak+ vk++ +++we+t +++eHnH+l+p Bradi3g10422.3.p 132 RFYSTHALLTGFAIRRGSNYRR------KKFHILCNRSGKLKPIQHM--QRKRKSNAMGSQCRAKVIVKLT-NEEWEITAVRSEHNHPLCP 213 5********************9......456799*********9887..88888888999***********.9****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-14 | 132 | 213 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.6E-33 | 335 | 428 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.025 | 617 | 653 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0085 | 628 | 655 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 740 aa Download sequence Send to blast |
MTDPGQVAES NHSGAEQLEG KEPVGKQAMP EGRLQPIGEN YQEQASNVDT ITEGLLTDKS 60 DKAEEQDHSH DIAEWNEMSS NDTSSGSDSD SSSGSELDTE LGKSFYPSFE ALENSRPPEV 120 GMKFPTLEDA ERFYSTHALL TGFAIRRGSN YRRKKFHILC NRSGKLKPIQ HMQRKRKSNA 180 MGSQCRAKVI VKLTNEEWEI TAVRSEHNHP LCPRPSLTRF FLNHRYLSTE EKSFLRVLQQ 240 SRINPKKAMK IFRRMRSNFR NIPSKEKDMS NLQCLEQWRK ENSDVETALK RFKELELRNL 300 GFSYTMQTDE DNIVRSLFWT DARSRVDYEI FGDFVSFDTT YSTNRHNMPF APIVGMNNHG 360 RTLVFGCALL QDQKTETFKW MFQTFLHVMG GKMPRAIITD QDEGMSKAIS EVMPQVKHRL 420 CKFNVMQKAR EKLEVFMAAR GNMNAELHGF VDNSLTEQEF EDAWAELIEK YDAGENEHLR 480 LMWETRKNWA PVYFRAHFYP FVESTGHHEG ANLLFKENVL PKDRIEKFIE QYERIQENIV 540 KTDEDDILQS GTEPAYFSYQ PIEKHAAHIY TRQIFLRIQK ELFYSTAFNV HEIQGGSVYR 600 LEKVCNYENP EVDRNSFEVL VEAGTFAFKC QCAKFTRDGI LCCHIFRVFT QLGINEIPAQ 660 YILPRWTHRF KEEQLKEYKD KCLKKTENTA RYAMLMTKMA DIGKGISMDG AKCSCFMHEL 720 DKIQERLATT GDIRRKSWK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 177 | QRKRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g10422.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755557.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A0Q3F4K2 | 0.0 | A0A0Q3F4K2_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G10422.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 8e-84 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g10422.3.p |