PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g10422.2.p
Common NameBRADI_3g10422
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 747aa    MW: 86812.5 Da    PI: 7.3484
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g10422.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.93e-17139220191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       +fY+++A  +GF +r+ +++++      +k +  C+++gk ++ ++   +++r+++    +C+ak+ vk++ +++we+t +++eHnH+l+p
  Bradi3g10422.2.p 139 RFYSTHALLTGFAIRRGSNYRR------KKFHILCNRSGKLKPIQHM--QRKRKSNAMGSQCRAKVIVKLT-NEEWEITAVRSEHNHPLCP 220
                       5********************9......456799*********9887..88888888999***********.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-14139220IPR004330FAR1 DNA binding domain
PfamPF105516.7E-33342435IPR018289MULE transposase domain
PROSITE profilePS509669.025624660IPR007527Zinc finger, SWIM-type
SMARTSM005750.0085635662IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MKMLQFVMTD PGQVAESNHS GAEQLEGKEP VGKQAMPEGR LQPIGENYQE QASNVDTITE  60
GLLTDKSDKA EEQDHSHDIA EWNEMSSNDT SSGSDSDSSS GSELDTELGK SFYPSFEALE  120
NSRPPEVGMK FPTLEDAERF YSTHALLTGF AIRRGSNYRR KKFHILCNRS GKLKPIQHMQ  180
RKRKSNAMGS QCRAKVIVKL TNEEWEITAV RSEHNHPLCP RPSLTRFFLN HRYLSTEEKS  240
FLRVLQQSRI NPKKAMKIFR RMRSNFRNIP SKEKDMSNLQ CLEQWRKENS DVETALKRFK  300
ELELRNLGFS YTMQTDEDNI VRSLFWTDAR SRVDYEIFGD FVSFDTTYST NRHNMPFAPI  360
VGMNNHGRTL VFGCALLQDQ KTETFKWMFQ TFLHVMGGKM PRAIITDQDE GMSKAISEVM  420
PQVKHRLCKF NVMQKAREKL EVFMAARGNM NAELHGFVDN SLTEQEFEDA WAELIEKYDA  480
GENEHLRLMW ETRKNWAPVY FRAHFYPFVE STGHHEGANL LFKENVLPKD RIEKFIEQYE  540
RIQENIVKTD EDDILQSGTE PAYFSYQPIE KHAAHIYTRQ IFLRIQKELF YSTAFNVHEI  600
QGGSVYRLEK VCNYENPEVD RNSFEVLVEA GTFAFKCQCA KFTRDGILCC HIFRVFTQLG  660
INEIPAQYIL PRWTHRFKEE QLKEYKDKCL KKTENTARYA MLMTKMADIG KGISMDGAKC  720
SCFMHELDKI QERLATTGDI RRKSWK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184QRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g10422.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755557.10.0protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A0Q3F4K20.0A0A0Q3F4K2_BRADI; Uncharacterized protein
STRINGBRADI3G10422.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1203336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-83FAR1-related sequence 3