PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g09570.1.p
Common NameBRADI_3g09570, LOC100840636
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 326aa    MW: 35785.6 Da    PI: 8.0556
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g09570.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12184209126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       y   +C+++ +tG+C yGd+CkF+H+
  Bradi3g09570.1.p 184 YQPDICKDYKETGYCGYGDSCKFMHD 209
                       67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-9181214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878183211IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7183210IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12184214IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10184209IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.106.7E-14253302IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.58E-13260303No hitNo description
PfamPF139202.1E-8260301No hitNo description
SMARTSM001849.1E-5261298IPR001841Zinc finger, RING-type
CDDcd001628.00E-8261302No hitNo description
PROSITE profilePS5008910.734261299IPR001841Zinc finger, RING-type
PROSITE patternPS005180276285IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034247Biological ProcesssnoRNA splicing
GO:0045292Biological ProcessmRNA cis splicing, via spliceosome
GO:0005684Cellular ComponentU2-type spliceosomal complex
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSDGGGSGGG EPGAGGAAPV CNFVRKPPKN IRKRPAASDD EGGGDDSGAI AAARSKKPPS  60
TTSKLFFSSA EASSEPRRFQ FESSRTIQSS TDSRATATLE TETAYDRDAR AIRERQLKQA  120
EESLKKNPSA SSSSSGEVYK GIHGYTDHKA GFRREHTVSG EKAGGAHGPL RASAHIRLST  180
RFDYQPDICK DYKETGYCGY GDSCKFMHDR GDYKSGWQLE KEWDEAEKAR KRRIAMRGED  240
GSDGEAEDDD SDDEEALPFA CYICREPFVD PVVTKCKHYF CEHCALKHHS KNKKCFVCNK  300
PTLGIFNAAQ EIRKKMAQDK KQQNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-6292316113317RING finger protein 113A
5z58_M4e-6292316113317RING finger protein 113A
6ff4_t4e-6292316113317RING finger protein 113A
6ff7_t4e-6292316113317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g09570.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614000.0AK361400.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1139O11.
GenBankAK3711030.0AK371103.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2125B03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572102.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V31e-167C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLI1HZA50.0I1HZA5_BRADI; Uncharacterized protein
STRINGBRADI3G09570.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-134C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]