PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g08570.5.p | ||||||||
Common Name | BRADI_3g08570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TALE | ||||||||
Protein Properties | Length: 474aa MW: 50596.6 Da PI: 8.3048 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26 | 1.6e-08 | 401 | 438 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe+ +yp+ +e+ LA++ gLt +qV +WF N R + Bradi3g08570.5.p 401 FENfiRPYPQDSEKDMLAERSGLTRTQVANWFINARVR 438 6655689*****************************87 PP | |||||||
2 | BELL | 31.8 | 3.5e-11 | 274 | 339 | 11 | 72 |
BELL 11 kLlslleeVdkrYkqyveqlqtvissFeava....glgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 Ll +l+ +d++Y+q+ +++q+ + F+ a g+g + + +A +a+S +r+L+ +i++ i Bradi3g08570.5.p 274 ELLRMLQLMDEKYNQCLDEIQATTAKFNSLAqpgiGIGIGGICAPFAHRAVSATYRALRRRITGEI 339 69**************************9975655888999*********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 0.0069 | 210 | 337 | IPR006563 | POX domain |
Pfam | PF07526 | 4.8E-17 | 215 | 336 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.098 | 379 | 442 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-23 | 381 | 453 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-8 | 382 | 446 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-15 | 382 | 450 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.39E-11 | 382 | 442 | No hit | No description |
Pfam | PF05920 | 6.6E-15 | 399 | 438 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 417 | 440 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MGSTSNPSFS PFGAEAMNGY FMASTGAQGM PLPPPDHGGY GGGGLCFGDA ADIGAQFSAN 60 NMLFASLASQ LFAPPQPHGG GHGHVGARTP PPEVEEMDGE FEASGGDYCH LDAQAMAICS 120 SSSSKKPRCD DWSSAEGSRA VSVYGPPPQT AGFYYYPPAT PRELSLSLRS VSSSDSMSMA 180 SGGDQFSSGS GLTHTRSHSQ QGQAARFRPV HFAVVVARSP YAPVAQQLLN DAVGRLLHGV 240 AAASSCSASS SVVSSNNNHH GARWGHGAHG VRGELLRMLQ LMDEKYNQCL DEIQATTAKF 300 NSLAQPGIGI GIGGICAPFA HRAVSATYRA LRRRITGEIM AAAAGGSRPR SQRAESSGSW 360 ESAFIQKHLA AQQARRREQH SWRPQRGLPE KSVAVLKSWL FENFIRPYPQ DSEKDMLAER 420 SGLTRTQVAN WFINARVRLW RPLIEELHEE LRRSSAAAPA MPMEHAVSQY VLG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g08570.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236337.2 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_024316333.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_024316334.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_024316335.1 | 0.0 | homeobox protein ATH1 | ||||
TrEMBL | A0A0Q3F7D7 | 0.0 | A0A0Q3F7D7_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G08570.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 9e-50 | homeobox gene 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g08570.5.p |