PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g06130.1.p
Common NameBRADI_3g06130
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 162aa    MW: 17584.5 Da    PI: 6.2761
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g06130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000126183123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C++Cg+ F ++  L  H++ H
  Bradi3g06130.1.p 61 YGCSYCGREFYSSQALGGHQNAH 83
                      67******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.45E-75887No hitNo description
Gene3DG3DSA:3.30.160.603.8E-46187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.8E-66185IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.2176188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
QDMGEPAEGG GASAGSPAHD RRGMIFNDGG AKASLRPVEL DLIGTVGAQA PEPEPEPRQL  60
YGCSYCGREF YSSQALGGHQ NAHKRERARG RRQLVVAIRG GAFVDADPRW EERAPDFLRM  120
MAAVELVYCT GDERRRRGVG RSGDDRRDSS GEQELDLTLK L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g06130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236296.11e-112zinc finger protein 7
TrEMBLA0A0Q3HZV01e-112A0A0Q3HZV0_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI3G06130.11e-111(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.15e-15C2H2 family protein