PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g04880.1.p
Common NameLOC104583437
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 357aa    MW: 37374.9 Da    PI: 5.49
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g04880.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.86.8e-192062850
                      HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        qv fskRr+g+ KK +EL+vLCda+va+++fs+ gk y ++
  Bradi3g04880.1.p 20 ALQVCFSKRRKGLVKKVFELCVLCDAQVALVVFSPAGKPYSFA 62
                      569***********************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-28564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.619565IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-26677IPR002100Transcription factor, MADS-box
CDDcd002651.06E-33678No hitNo description
PRINTSPR004049.6E-18727IPR002100Transcription factor, MADS-box
PfamPF003191.4E-221561IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-182742IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-184263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MKRTQGRQKI QMELIRDPNA LQVCFSKRRK GLVKKVFELC VLCDAQVALV VFSPAGKPYS  60
FAHPSFPAVV DRFLNPQSAP APAAAAAASG TDQLARLSEL QREAERLADA VHEAKEVRGK  120
ELEAMVRAAG VWVDGDLSRC GAPQLEAALA ALLGVQAEAA QRAHEILAQE AMVQQQQQQQ  180
CLAADGIGSS HGGNLFDYLG SYAAADHGHG GDLFDYLGSG GPYYAPDAMG SSHGNAHEAA  240
AMDNGTDLMC NDAGSFFHYL GSSSGSFMAD GGGGGGNHGE VGAVDTNIRL MGGGGMNHGL  300
VPMMPLPPPQ PPALPFNHGG FDYYNLGYNN QGDLGHGRGG AFYEMDGVYG TTCSFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g04880.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693450.0KF469345.1 Brachypodium distachyon MADS-box transcription factor 51 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289954.10.0MADS-box protein SVP-like
TrEMBLI1HXK10.0I1HXK1_BRADI; MADS-box transcription factor 51
STRINGBRADI3G04880.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.11e-23AGAMOUS-like 91
Publications ? help Back to Top
  1. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]