PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g04381.1.p
Common NameBRADI_3g04381, LOC104583936
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 333aa    MW: 35956.2 Da    PI: 6.0715
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g04381.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2384.2e-124189356
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      ++GVr+  + gr++A+I+dp+    ++  slg fg ae+Aa+a++aa+ +l+g+
  Bradi3g04381.1.p 41 FRGVRR--QGGRYRAQIWDPKG---QTMMSLGCFGAAEDAARAYDAAAIALHGA 89
                      8***84..47*********943...4*************************995 PP
2AP243.76.7e-14200251155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       sg++GV+++ +  r+ A+I+dp++   r+  +lg+f  aeeAa+a++aa+ +l+g
  Bradi3g04381.1.p 200 SGFRGVYQNFSGSRYNARIWDPVQ---RAGRWLGTFEAAEEAAEAYDAAAVSLYG 251
                       79*********9*********765...59*********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.7E-174096IPR001471AP2/ERF domain
PROSITE profilePS5103214.5134096IPR001471AP2/ERF domain
SMARTSM003803.4E-1540102IPR001471AP2/ERF domain
PfamPF008473.5E-54188IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-134196IPR016177DNA-binding domain
PfamPF008472.7E-6200251IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-15200259IPR016177DNA-binding domain
PROSITE profilePS5103216.792201259IPR001471AP2/ERF domain
SMARTSM003802.7E-19201265IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-17202259IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAVEHDDEDD DGRESQSVPS VPSKKKKKTA KKDPADARTE FRGVRRQGGR YRAQIWDPKG  60
QTMMSLGCFG AAEDAARAYD AAAIALHGAA AKINFKGPAA VAAAPLADDD IDAHGHEIAP  120
KKKKKEEEEE AAVMNSKRVQ HRREEAATDA PLADEDTDAH VHEIGLKKKK IKAPVAVMSS  180
KSGVQGGGKA AARARPISRS GFRGVYQNFS GSRYNARIWD PVQRAGRWLG TFEAAEEAAE  240
AYDAAAVSLY GARAITNFEQ PPPKAAANDG AEMSPPMELL NDFPELTAPV FSESLIPGPQ  300
VDDLLTYLPP AEWQRQVHEL LHDMGFTDYV VA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125PKKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g04381.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316478.10.0AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A0Q3F1K90.0A0A0Q3F1K9_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5011622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-06erf domain protein 9