PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g03747.3.p | ||||||||
Common Name | BRADI_3g03747, LOC100822239 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HB-PHD | ||||||||
Protein Properties | Length: 737aa MW: 82008.5 Da PI: 7.7446 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.1 | 1.7e-09 | 453 | 497 | 8 | 52 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +e+L ++F+ + p ++ +e+LA++lg++ +++ WF+N R Bradi3g03747.3.p 453 PPAAVEVLRKVFAVDELPARDVKEKLATELGISYEKIDKWFKNTR 497 567899*************************************99 PP | |||||||
2 | PHD | 29 | 2.4e-10 | 200 | 253 | 1 | 50 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS.TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg.ewlCeeCke 50 +C+ C++ s ++++++C+ +Ck ++H+kC +++ ++ g wlC+ C + Bradi3g03747.3.p 200 ICSRCKSdeSVPDNKIIFCEgSCKMSYHQKCSEPPFDKILPTGGhGWLCKFCLC 253 6999**966666*******955*************9955555559*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.48E-11 | 192 | 257 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 5.7E-10 | 197 | 255 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 9.659 | 198 | 254 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 9.3E-6 | 200 | 252 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 9.7E-8 | 200 | 253 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 201 | 251 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 4.2E-10 | 438 | 497 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.05 | 443 | 503 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-10 | 445 | 511 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.0E-9 | 445 | 507 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.74E-9 | 446 | 507 | No hit | No description |
Pfam | PF00046 | 5.3E-7 | 452 | 497 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 737 aa Download sequence Send to blast |
MNTSENKSAC SIPRRSSRRR KQSSSELVSL SKRPSHRNAS SSYKLDQCSP KRTARTARNA 60 NLAKYIKNKY YRSPLSQRRS SSAVSGKTAT GPVRRRSRKR RRQNTDCDEA TRLERRARYL 120 LIKIKSEQNL LDAYSGDGWN GHSREKLKPE KELQRAKRQI IKSKIAIRDI IHQLDLYSSS 180 GNMDDSVMPP DEPVNPDNTI CSRCKSDESV PDNKIIFCEG SCKMSYHQKC SEPPFDKILP 240 TGGHGWLCKF CLCKMKILEA VNAHLGTSLT VTCPSKDIFK EATEHIGSDD GPGEDLLSEY 300 SGDEDYDPEE NDGTSSSLGR GEESISSESN CSGSPLYSPN DDIPGFISAD FTDAEGFCHA 360 NSHLEFDSGE DVTAEMVNYQ RPKRDVDYRR LNEEMFGKLA ENEKQSDDED WGVNRKKRRR 420 VDSAGGAKSV EGVSGVTSNE NLQPHRRKLF RMPPAAVEVL RKVFAVDELP ARDVKEKLAT 480 ELGISYEKID KWFKNTRCAA LRDRKAEGNS HIAGPSKSSG KRVEKAEVSG KFDSVDNSYL 540 PPLSKTIETK PESNSRPVRR RLHNKGVSLC PTSEVKETTS PTIKHCSNTH PIHLADRNIN 600 TEDRAISQVD TGPSDDPFFD AILAYPNINT SDKVVSTGDL VTLADEPFLD AMLADSHVFY 660 TERTVSREDV RGPSNDQPFL DVIENVCGLK HRLQRLEDML SSAAPGDTGT AKGDVENQLV 720 VLVPTAELKD KPQPGN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 21 | SRRRKQ |
2 | 97 | 101 | RKRRR |
3 | 416 | 420 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g03747.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570921.1 | 0.0 | pathogenesis-related homeodomain protein | ||||
TrEMBL | I1HX60 | 0.0 | I1HX60_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G03747.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 1e-80 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g03747.3.p |
Entrez Gene | 100822239 |