PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g02980.1.p | ||||||||
Common Name | BRADI_3g02980, LOC100834921 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bZIP | ||||||||
Protein Properties | Length: 194aa MW: 19626.9 Da PI: 8.0879 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.4 | 1.2e-11 | 37 | 77 | 4 | 44 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 +r++r+ +NRe+ArrsR RK+ ++ L+ ++ L eN Bradi3g02980.1.p 37 QRRAKRMLSNRESARRSRMRKQRHLDDLAAQAAHLRRENAH 77 689************************************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.1E-14 | 34 | 98 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.576 | 36 | 78 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.7E-9 | 37 | 78 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.75E-10 | 38 | 83 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-8 | 38 | 110 | No hit | No description |
CDD | cd14702 | 1.73E-15 | 39 | 87 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 41 | 56 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MASSSGSGSA TTTGSLSPSM AAVAGASEEE MRALMEQRRA KRMLSNRESA RRSRMRKQRH 60 LDDLAAQAAH LRRENAHVAA ALGLTARGLL AVDAENAVLR TQAAELAARL ASLNDILSCI 120 GMSAANNNSS GSSGCGGSNS NSNSNTAAAA AVALTVAAAA AATGGDPLLL GGFDGALDDM 180 FRSSPDLFMF QPC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 57 | RRSRMRKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00239 | DAP | Transfer from AT1G75390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g02980.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070887 | 1e-106 | AK070887.1 Oryza sativa Japonica Group cDNA clone:J023064O22, full insert sequence. | |||
GenBank | AP004997 | 1e-106 | AP004997.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0030G11. | |||
GenBank | AP014958 | 1e-106 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010233767.1 | 1e-132 | bZIP transcription factor 11 | ||||
TrEMBL | I1HWW6 | 1e-131 | I1HWW6_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G02980.1 | 1e-131 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4459 | 33 | 67 | Representative plant | OGRP551 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34590.1 | 2e-17 | G-box binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g02980.1.p |
Entrez Gene | 100834921 |