PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g00721.1.p
Common NameBRADI_3g00721
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 472aa    MW: 52907.8 Da    PI: 7.2276
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g00721.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.91.5e-244594251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rie  + rqvtfskRr g+lKKA+EL vLCdaev +++fs++g+lyey+s
  Bradi3g00721.1.p 45 RIECATSRQVTFSKRRSGLLKKAFELGVLCDAEVGLLVFSPRGRLYEYAS 94
                      89999*******************************************86 PP
2K-box78.22e-26117209799
             K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       k+le+a  + ++ e++ L+++i+ ++  qR+l+Ge+Les+s  eLq+LeqqLeksl+ iR+kK++ +l+qi el++ke++l  en +Lr+k+ 
  Bradi3g00721.1.p 117 KALESAGVQMCRSEATALQQKIDAIEGYQRKLMGEGLESCSTHELQELEQQLEKSLSCIRQKKQKKMLDQILELREKEEKLLMENSSLREKYH 209
                       448889999*********************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.0483696IPR002100Transcription factor, MADS-box
SMARTSM004327.6E-323695IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-2638110IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-253858IPR002100Transcription factor, MADS-box
PfamPF003198.0E-234592IPR002100Transcription factor, MADS-box
CDDcd002655.47E-3246111No hitNo description
PRINTSPR004041.1E-255873IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-257394IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.588124214IPR002487Transcription factor, K-box
PfamPF014862.3E-24124208IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MVAAAEPEEE QQIVAAADVE MSSPEEKKKE KAVQQGRRGR REMRRIECAT SRQVTFSKRR  60
SGLLKKAFEL GVLCDAEVGL LVFSPRGRLY EYASTADLQK TIDRYLNHTK GAPANEKALE  120
SAGVQMCRSE ATALQQKIDA IEGYQRKLMG EGLESCSTHE LQELEQQLEK SLSCIRQKKQ  180
KKMLDQILEL REKEEKLLME NSSLREKYHA LPLLELATRT VEAAHARSPG ATIGGGEEAP  240
EDNDDERRRR QKDVEDVETE LAGKVLKKGK KKQAKDELDR QKQAEKKRRR LEKALANSAA  300
IISELEKKKQ KKKEEQQRLD EEGASIAEAV ALHVLIGEDS DESRHLMLNK HRRCNDWEPS  360
AGFDFTVDMQ GTDIYSPGGL VCANHAYAPK GRWIDWGNAQ PLPTWGEVRD LKASYYQGTF  420
HQSVPCPGFM AAQAVSSLQI GEDSSEMTSP SQGVVNRMLG GGNRLNLYRE I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A1e-1338105268Myocyte-specific enhancer factor 2A
3mu6_B1e-1338105268Myocyte-specific enhancer factor 2A
3mu6_C1e-1338105268Myocyte-specific enhancer factor 2A
3mu6_D1e-1338105268Myocyte-specific enhancer factor 2A
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269289KKKQAKDELDRQKQAEKKRRR
2286290KRRRL
3287310RRRLEKALANSAAIISELEKKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g00721.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693160.0KF469316.1 Brachypodium distachyon MADS-box transcription factor 21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233660.10.0MADS-box protein SOC1
TrEMBLA0A0Q3PTI70.0A0A0Q3PTI7_BRADI; Uncharacterized protein
STRINGSi019985m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38051616
Representative plantOGRP387233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-43AGAMOUS-like 20