PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g62515.1.p | ||||||||
Common Name | BRADI_2g62515, LOC100845077 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 303aa MW: 32103.6 Da PI: 5.0518 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.1 | 2e-22 | 18 | 66 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kri+++ rqv fskRr+g++KKA+ELSvLC+a+va ++fs+ gk + + Bradi2g62515.1.p 18 KRIDSEEARQVCFSKRRAGLFKKASELSVLCGAQVAAVVFSPAGKAFSF 66 79******************************************97766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.7E-34 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-27 | 10 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.044 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.12E-36 | 11 | 77 | No hit | No description |
PRINTS | PR00404 | 1.6E-19 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-25 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-19 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-19 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MAPTRRRPSM GRQKIAIKRI DSEEARQVCF SKRRAGLFKK ASELSVLCGA QVAAVVFSPA 60 GKAFSFGHPS VDVVVDRLLA TLAANNTPGA AAAAASSLGA EEQQTLLELN REYGELRAMM 120 EKEKLRKERA EAETKRLLAE GSSPAAAWLD ADLGDLSEAE LLSFQASLME VQRQVQIRAD 180 GVLREALNAD RNAAAARIMA PPAPPLAMPG GFANSVYEVG GSSSNGGGFV NNNNGVGGAV 240 EEMMMNNMLQ QQMNMMDLMA PPPGLMGHQL PQATPGMGFQ ETMDLPPPEF GPDGGFFGPP 300 PY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g62515.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567547.3 | 0.0 | agamous-like MADS-box protein AGL23 | ||||
TrEMBL | A0A0Q3GL47 | 0.0 | A0A0Q3GL47_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G20090.1 | 5e-70 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-26 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g62515.1.p |
Entrez Gene | 100845077 |