PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g60554.4.p
Common NameBRADI_2g60554, LOC104582958
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 574aa    MW: 64450.2 Da    PI: 7.953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g60554.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.5e-13241031499
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       + +v+p   ++++g +  +s  ++le ++g+ ++v +  + k ++++l++GW+ Fv+an+++e+  ++F++ g+s+f   v++f++
  Bradi2g60554.4.p  24 HSMVIPEWVINHFGRNIVGS--IKLEAPNGNIYDVGV--TVKMNTTFLQSGWRAFVDANQIEENFCLMFRYRGTSRF--EVTIFDS 103
                       67999988887777776675..***************..99999***************************999999..9999986 PP
2B348.21.9e-15472570699
                       ..-HHHHTT-EE--HHH.HTT........---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                B3   6 tpsdvlksgrlvlpkkfaeeh........ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                       +ps v++s+  ++++  ae++        g   ++ + l le   ++ r+W+ +l  r++ +r+ ++kGW +F+++n+L++gD ++F++ ++ 
  Bradi2g60554.4.p 472 SPSPVFSSQ--YISRYLAEKYatgltgvrGR--RGAISLLLERdgRKRRTWSCQL--RRSIDRTRIAKGWPSFARDNHLQAGDLCLFEVLRNe 558
                       688888887..88888898889888765422..233444444323555*******..*******************************99888 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++ ++vv ++r+
  Bradi2g60554.4.p 559 EQLKMVVYIIRR 570
                       *********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.25111104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.59E-1513104IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-414104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-1520105IPR015300DNA-binding pseudobarrel domain
PfamPF023628.8E-1123103IPR003340B3 DNA binding domain
CDDcd100178.19E-1424102No hitNo description
Gene3DG3DSA:2.40.330.106.6E-11186279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-11188292IPR015300DNA-binding pseudobarrel domain
CDDcd100176.54E-8191292No hitNo description
PROSITE profilePS508637.063193294IPR003340B3 DNA binding domain
SMARTSM010190.059193296IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-13449573IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-14449571IPR015300DNA-binding pseudobarrel domain
CDDcd100175.40E-13454569No hitNo description
SMARTSM010190.0052466571IPR003340B3 DNA binding domain
PfamPF023623.8E-13472570IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857506571IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MRNPCGCCQS KIRFIRHING NYMHSMVIPE WVINHFGRNI VGSIKLEAPN GNIYDVGVTV  60
KMNTTFLQSG WRAFVDANQI EENFCLMFRY RGTSRFEVTI FDSNGKEKVP CRDSMGSDSA  120
SQSSAGEGSD STAYSSKELP AENNPSLDDS MESDDLQVLS KYYVLSGLCD LTEEQLTKLH  180
ALVGKIKPEI PVLVVLMKKS NVNHNFTLII RKDYAREYFP PKNTTIILQL PGKSKHWNCK  240
FYILPSGESK AGRCDLSIGN FVRDNHVRKG DIFLLQPITK VKGHIFTVTV HPLHKASIDH  300
SPDGSTDIGL NHGCASTKMA STASVKEEPI IDESTKTALT PRVKEEPTID GEEISFWGHA  360
EHGSSDSSEE DSQPRILLNH GCASTKMALT ARVKEERTID GEEISSSGHG EHVFSDNSNE  420
TSEARFMPLD TSCLLRAQEK KMMEKIEAIK SELPIYWKVM NKSDVCVHKR GSPSPVFSSQ  480
YISRYLAEKY ATGLTGVRGR RGAISLLLER DGRKRRTWSC QLRRSIDRTR IAKGWPSFAR  540
DNHLQAGDLC LFEVLRNEEQ LKMVVYIIRR EEC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g60554.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754674.10.0B3 domain-containing protein Os03g0620400 isoform X1
TrEMBLA0A0Q3GM220.0A0A0Q3GM22_BRADI; Uncharacterized protein
STRINGBRADI2G60554.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-12B3 family protein