PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g60554.2.p
Common NameBRADI_2g60554, LOC104582958
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 637aa    MW: 71237.9 Da    PI: 8.016
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g60554.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.4e-13871661499
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       + +v+p   ++++g +  +s  ++le ++g+ ++v +  + k ++++l++GW+ Fv+an+++e+  ++F++ g+s+f   v++f++
  Bradi2g60554.2.p  87 HSMVIPEWVINHFGRNIVGS--IKLEAPNGNIYDVGV--TVKMNTTFLQSGWRAFVDANQIEENFCLMFRYRGTSRF--EVTIFDS 166
                       67999988887777776665..***************..99999***************************999999..9999986 PP
2B3482.2e-15535633699
                       ..-HHHHTT-EE--HHH.HTT........---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                B3   6 tpsdvlksgrlvlpkkfaeeh........ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                       +ps v++s+  ++++  ae++        g   ++ + l le   ++ r+W+ +l  r++ +r+ ++kGW +F+++n+L++gD ++F++ ++ 
  Bradi2g60554.2.p 535 SPSPVFSSQ--YISRYLAEKYatgltgvrGR--RGAISLLLERdgRKRRTWSCQL--RRSIDRTRIAKGWPSFARDNHLQAGDLCLFEVLRNe 621
                       688888887..88888898889888765422..233444444323555*******..*******************************99888 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++ ++vv ++r+
  Bradi2g60554.2.p 622 EQLKMVVYIIRR 633
                       *********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.25174167IPR003340B3 DNA binding domain
SuperFamilySSF1019361.86E-1576167IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-477167IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-1583168IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-1086166IPR003340B3 DNA binding domain
CDDcd100174.86E-1487165No hitNo description
Gene3DG3DSA:2.40.330.107.8E-11249342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-11251355IPR015300DNA-binding pseudobarrel domain
CDDcd100173.68E-8254355No hitNo description
PROSITE profilePS508637.063256357IPR003340B3 DNA binding domain
SMARTSM010190.059256359IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-14512634IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-13512636IPR015300DNA-binding pseudobarrel domain
CDDcd100172.87E-13517632No hitNo description
SMARTSM010190.0052529634IPR003340B3 DNA binding domain
PfamPF023624.4E-13535633IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857569634IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MASPSDYECG CARDIKDAVR ESRAPAHAAG ELVFLQATTT SADSRPTSRL QAPRFPLLKE  60
VSKMRNPCGC CQSKIRFIRH INGNYMHSMV IPEWVINHFG RNIVGSIKLE APNGNIYDVG  120
VTVKMNTTFL QSGWRAFVDA NQIEENFCLM FRYRGTSRFE VTIFDSNGKE KVPCRDSMGS  180
DSASQSSAGE GSDSTAYSSK ELPAENNPSL DDSMESDDLQ VLSKYYVLSG LCDLTEEQLT  240
KLHALVGKIK PEIPVLVVLM KKSNVNHNFT LIIRKDYARE YFPPKNTTII LQLPGKSKHW  300
NCKFYILPSG ESKAGRCDLS IGNFVRDNHV RKGDIFLLQP ITKVKGHIFT VTVHPLHKAS  360
IDHSPDGSTD IGLNHGCAST KMASTASVKE EPIIDESTKT ALTPRVKEEP TIDGEEISFW  420
GHAEHGSSDS SEEDSQPRIL LNHGCASTKM ALTARVKEER TIDGEEISSS GHGEHVFSDN  480
SNETSEARFM PLDTSCLLRA QEKKMMEKIE AIKSELPIYW KVMNKSDVCV HKRGSPSPVF  540
SSQYISRYLA EKYATGLTGV RGRRGAISLL LERDGRKRRT WSCQLRRSID RTRIAKGWPS  600
FARDNHLQAG DLCLFEVLRN EEQLKMVVYI IRREEC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g60554.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754674.10.0B3 domain-containing protein Os03g0620400 isoform X1
TrEMBLA0A0Q3GM220.0A0A0Q3GM22_BRADI; Uncharacterized protein
STRINGBRADI2G60554.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Representative plantOGRP1136337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-11B3 family protein