PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g60554.1.p | ||||||||
Common Name | BRADI_2g60554, LOC104582958 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 636aa MW: 71166.8 Da PI: 8.016 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.1 | 6.4e-13 | 87 | 166 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +v+p ++++g + +s ++le ++g+ ++v + + k ++++l++GW+ Fv+an+++e+ ++F++ g+s+f v++f++ Bradi2g60554.1.p 87 HSMVIPEWVINHFGRNIVGS--IKLEAPNGNIYDVGV--TVKMNTTFLQSGWRAFVDANQIEENFCLMFRYRGTSRF--EVTIFDS 166 67999988887777776665..***************..99999***************************999999..9999986 PP | |||||||
2 | B3 | 48 | 2.2e-15 | 534 | 632 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT........---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 6 tpsdvlksgrlvlpkkfaeeh........ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 +ps v++s+ ++++ ae++ g ++ + l le ++ r+W+ +l r++ +r+ ++kGW +F+++n+L++gD ++F++ ++ Bradi2g60554.1.p 534 SPSPVFSSQ--YISRYLAEKYatgltgvrGR--RGAISLLLERdgRKRRTWSCQL--RRSIDRTRIAKGWPSFARDNHLQAGDLCLFEVLRNe 620 688888887..88888898889888765422..233444444323555*******..*******************************99888 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ ++vv ++r+ Bradi2g60554.1.p 621 EQLKMVVYIIRR 632 *********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.251 | 74 | 167 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.86E-15 | 76 | 167 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.2E-4 | 77 | 167 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-15 | 83 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-10 | 86 | 166 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.28E-14 | 87 | 165 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.7E-11 | 248 | 341 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-11 | 250 | 354 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.95E-8 | 253 | 354 | No hit | No description |
SMART | SM01019 | 0.059 | 255 | 358 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 7.063 | 255 | 356 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-14 | 511 | 633 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-13 | 511 | 635 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.24E-13 | 516 | 631 | No hit | No description |
SMART | SM01019 | 0.0052 | 528 | 633 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-13 | 534 | 632 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.857 | 568 | 633 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MASPSDYECG CARDIKDAVR ESRAPAHAAG ELVFLQATTT SADSRPTSRL QAPRFPLLKE 60 VSKMRNPCGC CQSKIRFIRH INGNYMHSMV IPEWVINHFG RNIVGSIKLE APNGNIYDVG 120 VTVKMNTTFL QSGWRAFVDA NQIEENFCLM FRYRGTSRFE VTIFDSNGKE KVPCRDSMGS 180 DSASQSSAGE GSDSTAYSSK ELPENNPSLD DSMESDDLQV LSKYYVLSGL CDLTEEQLTK 240 LHALVGKIKP EIPVLVVLMK KSNVNHNFTL IIRKDYAREY FPPKNTTIIL QLPGKSKHWN 300 CKFYILPSGE SKAGRCDLSI GNFVRDNHVR KGDIFLLQPI TKVKGHIFTV TVHPLHKASI 360 DHSPDGSTDI GLNHGCASTK MASTASVKEE PIIDESTKTA LTPRVKEEPT IDGEEISFWG 420 HAEHGSSDSS EEDSQPRILL NHGCASTKMA LTARVKEERT IDGEEISSSG HGEHVFSDNS 480 NETSEARFMP LDTSCLLRAQ EKKMMEKIEA IKSELPIYWK VMNKSDVCVH KRGSPSPVFS 540 SQYISRYLAE KYATGLTGVR GRRGAISLLL ERDGRKRRTW SCQLRRSIDR TRIAKGWPSF 600 ARDNHLQAGD LCLFEVLRNE EQLKMVVYII RREEC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g60554.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014754675.1 | 0.0 | B3 domain-containing protein Os03g0620400 isoform X2 | ||||
TrEMBL | A0A0Q3GK82 | 0.0 | A0A0Q3GK82_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G60554.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 8e-12 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g60554.1.p |
Entrez Gene | 104582958 |