PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g58770.1.p
Common NameBRADI_2g58770, LOC100842022
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 443aa    MW: 48044.2 Da    PI: 8.0836
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g58770.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.4e-1181107127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C +++rtG C++G +C+F+H+p
  Bradi2g58770.1.p  81 PGEPDCTYYLRTGLCRFGISCRFNHPP 107
                       5789*********************97 PP
2zf-CCCH382.7e-12128152327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C+++++tGtCk+G++CkF+H++
  Bradi2g58770.1.p 128 QPECQYYLKTGTCKFGPTCKFHHPR 152
                       799********************96 PP
3zf-CCCH37.24.9e-12175198427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       ++C ++++tG+CkyG++CkF+H++
  Bradi2g58770.1.p 175 KECAYYLKTGQCKYGNTCKFNHPE 198
                       68********************96 PP
4zf-CCCH34.63.3e-11335360227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C ++ +tG Ck+G+ CkF+H++
  Bradi2g58770.1.p 335 DQPECIYYIKTGDCKFGAVCKFHHPR 360
                       689*********************96 PP
5zf-CCCH40.64.4e-13380406127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++elC+f++r+G+Ck+G +CkF H++
  Bradi2g58770.1.p 380 PGEELCKFYSRYGICKFGINCKFDHPM 406
                       689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501031580108IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-680107IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-982107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-585108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-486106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694125153IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6125152IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-10128152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6129154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5131153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6170198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22171199IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-6173198IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9175198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5177197IPR000571Zinc finger, CCCH-type
SMARTSM003560.0071333360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019333361IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7335360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5336360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6377405IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7379406IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953379407IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10381406IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-5383404IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDEAGRAPAP AAAVTVTASS SAANASDPSP PPPPAPATAN AAADTDAPSP DPDALYDEGM  60
WQEMTMSSGA PMQPGPYPER PGEPDCTYYL RTGLCRFGIS CRFNHPPDRN LAIASARMKG  120
EYPERVGQPE CQYYLKTGTC KFGPTCKFHH PREKAGIAGM VQLNTLGYPL RLNEKECAYY  180
LKTGQCKYGN TCKFNHPELF NAVASSRGSP IYPSLHTSAS AGPHSYAGTI SNWTYPRGSF  240
IPSPRWQSPS NYAPMIVQQG LVQVPSWNSY PGQMLPVSSS ESRLQSPGAQ QNYGTYRQGE  300
ASSGNQGMLS PYRPSSFPVP QYALQRENVF PERPDQPECI YYIKTGDCKF GAVCKFHHPR  360
VRSLPPPDCV LSPMGLPLRP GEELCKFYSR YGICKFGINC KFDHPMASPM GVYAYGFSAS  420
ASTNAPMARC LLESPSGSAY TP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g58770.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564925.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLI1HUK80.0I1HUK8_BRADI; Uncharacterized protein
STRINGBRADI2G58770.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-146zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]