PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g58030.4.p | ||||||||
Common Name | LOC104582923 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 590aa MW: 65534.9 Da PI: 6.1205 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.1 | 1e-15 | 89 | 178 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkv+ + s +v+p +fa++++ k + + led g +W+v++ + +g ++ GWk+Fv ++ + +g+f+vF+ + r+ f Bradi2g58030.4.p 89 FFKVM--MGY-FSETMVIPPPFAKTIKDLKGS--NVYLEDAFGLRWRVRV--CSDDGLLSFGHGWKNFVLDHAIGAGEFLVFRQIARTVF--A 172 67777..334.4556***********766444..7***************..999999*************************8887777..8 PP EEEE-S CS B3 94 vkvfrk 99 v++f + Bradi2g58030.4.p 173 VQIFAR 178 888866 PP | |||||||
2 | B3 | 32.6 | 1.5e-10 | 517 | 581 | 29 | 95 |
-..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 kk++ k l+led++ r+W v + + +++ + +GW + +++ngL+egD + ++l g+se el+v+ Bradi2g58030.4.p 517 KKQGRKVLVLEDPRARRWPVLY--QCTPRFSGFIAGWVDVCRENGLREGDACELELRGNSELELRVR 581 45567789**************..66666666778*********************99999988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.34E-22 | 84 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-20 | 84 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.028 | 86 | 179 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.09E-19 | 87 | 176 | No hit | No description |
Pfam | PF02362 | 4.0E-13 | 89 | 178 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-14 | 89 | 179 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.24E-12 | 489 | 581 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-11 | 491 | 581 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 7.3E-4 | 491 | 584 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.57E-10 | 507 | 582 | No hit | No description |
Pfam | PF02362 | 2.8E-8 | 517 | 580 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.532 | 524 | 584 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MLEMVGVKKE QDESQDDDEE VGAKMISRQE KITSQKGEEK KKRKMASDPH RKRACVDCTK 60 RCARVHGRSA SPDPENARRP AAMPTLPSFF KVMMGYFSET MVIPPPFAKT IKDLKGSNVY 120 LEDAFGLRWR VRVCSDDGLL SFGHGWKNFV LDHAIGAGEF LVFRQIARTV FAVQIFARSA 180 CERLYFCEKN QRQSRKRKKA REKTGKEMVK VSQDNGDRRS GKKQRSSYNQ QDDLGTVTLL 240 DAETETAADC TILHSGGGTE TEDRGGSNFP TSPELATPLA TMDINDEITD DIFLTADVYE 300 FETDFCDPEA FSVEVGLEEH VAHGHNSGFS CGAEMSSRNC DSSVGVCLEN REMADVPVTS 360 TAGNDPVLGI GMDINELSVI RGEKSYSEID AEMPSSECAI DTCKRFGENL LLPPDGNQIQ 420 VQRKEEGSSE KQDSNLQLQE CPGQIAGEVI PANPKPRERP GRRQKNHMQS VAGNNPEDLK 480 TRRPKASDRK FVVAVPPPDQ TWLDLPCRLP AVVPRAKKQG RKVLVLEDPR ARRWPVLYQC 540 TPRFSGFIAG WVDVCRENGL REGDACELEL RGNSELELRV RPPGSSTGP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 43 | QKGEEKKKRK |
2 | 194 | 198 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g58030.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232708.2 | 0.0 | B3 domain-containing protein Os01g0905400 | ||||
Refseq | XP_024314236.1 | 0.0 | B3 domain-containing protein Os01g0905400 | ||||
Refseq | XP_024314237.1 | 0.0 | B3 domain-containing protein Os01g0905400 | ||||
Swissprot | Q5N6V0 | 3e-75 | Y1054_ORYSJ; B3 domain-containing protein Os01g0905400 | ||||
TrEMBL | I1HUC8 | 0.0 | I1HUC8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G58030.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 2e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g58030.4.p |
Entrez Gene | 104582923 |
Publications ? help Back to Top | |||
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