PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g58030.2.p
Common NameLOC104582923
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 590aa    MW: 65534.9 Da    PI: 6.1205
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g58030.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-1589178199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv+    +  s  +v+p +fa++++  k +   + led  g +W+v++  +  +g   ++ GWk+Fv ++ + +g+f+vF+ + r+ f   
  Bradi2g58030.2.p  89 FFKVM--MGY-FSETMVIPPPFAKTIKDLKGS--NVYLEDAFGLRWRVRV--CSDDGLLSFGHGWKNFVLDHAIGAGEFLVFRQIARTVF--A 172
                       67777..334.4556***********766444..7***************..999999*************************8887777..8 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v++f +
  Bradi2g58030.2.p 173 VQIFAR 178
                       888866 PP
2B332.61.5e-105175812995
                       -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       kk++ k l+led++ r+W v +  + +++   + +GW + +++ngL+egD + ++l g+se el+v+
  Bradi2g58030.2.p 517 KKQGRKVLVLEDPRARRWPVLY--QCTPRFSGFIAGWVDVCRENGLREGDACELELRGNSELELRVR 581
                       45567789**************..66666666778*********************99999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2284181IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-2084181IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.02886179IPR003340B3 DNA binding domain
CDDcd100179.09E-1987176No hitNo description
PfamPF023624.0E-1389178IPR003340B3 DNA binding domain
SMARTSM010191.3E-1489179IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-12489581IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-11491581IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.3E-4491584IPR003340B3 DNA binding domain
CDDcd100178.57E-10507582No hitNo description
PfamPF023622.8E-8517580IPR003340B3 DNA binding domain
PROSITE profilePS5086310.532524584IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MLEMVGVKKE QDESQDDDEE VGAKMISRQE KITSQKGEEK KKRKMASDPH RKRACVDCTK  60
RCARVHGRSA SPDPENARRP AAMPTLPSFF KVMMGYFSET MVIPPPFAKT IKDLKGSNVY  120
LEDAFGLRWR VRVCSDDGLL SFGHGWKNFV LDHAIGAGEF LVFRQIARTV FAVQIFARSA  180
CERLYFCEKN QRQSRKRKKA REKTGKEMVK VSQDNGDRRS GKKQRSSYNQ QDDLGTVTLL  240
DAETETAADC TILHSGGGTE TEDRGGSNFP TSPELATPLA TMDINDEITD DIFLTADVYE  300
FETDFCDPEA FSVEVGLEEH VAHGHNSGFS CGAEMSSRNC DSSVGVCLEN REMADVPVTS  360
TAGNDPVLGI GMDINELSVI RGEKSYSEID AEMPSSECAI DTCKRFGENL LLPPDGNQIQ  420
VQRKEEGSSE KQDSNLQLQE CPGQIAGEVI PANPKPRERP GRRQKNHMQS VAGNNPEDLK  480
TRRPKASDRK FVVAVPPPDQ TWLDLPCRLP AVVPRAKKQG RKVLVLEDPR ARRWPVLYQC  540
TPRFSGFIAG WVDVCRENGL REGDACELEL RGNSELELRV RPPGSSTGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13443QKGEEKKKRK
2194198RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g58030.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232708.20.0B3 domain-containing protein Os01g0905400
RefseqXP_024314236.10.0B3 domain-containing protein Os01g0905400
RefseqXP_024314237.10.0B3 domain-containing protein Os01g0905400
SwissprotQ5N6V03e-75Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLI1HUC80.0I1HUC8_BRADI; Uncharacterized protein
STRINGBRADI2G58030.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Representative plantOGRP89721014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-10B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]