PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g57747.2.p
Common NameBRADI_2g57747
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 688aa    MW: 72670.9 Da    PI: 6.9105
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g57747.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.3e-15241300155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Bradi2g57747.2.p 241 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 300
                       57*******************666664478446*************************98 PP
2AP246.77.8e-15343394155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Bradi2g57747.2.p 343 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 394
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-17241310IPR016177DNA-binding domain
CDDcd000181.54E-19241310No hitNo description
PfamPF008475.7E-12241300IPR001471AP2/ERF domain
PROSITE profilePS5103219.23242308IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15242308IPR001471AP2/ERF domain
SMARTSM003801.7E-29242314IPR001471AP2/ERF domain
PRINTSPR003673.6E-6243254IPR001471AP2/ERF domain
CDDcd000184.35E-22343404No hitNo description
SuperFamilySSF541711.05E-17343404IPR016177DNA-binding domain
PfamPF008479.7E-10343394IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-18344403IPR001471AP2/ERF domain
SMARTSM003801.5E-33344408IPR001471AP2/ERF domain
PROSITE profilePS5103219.045344402IPR001471AP2/ERF domain
PRINTSPR003673.6E-6384404IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MATVNNWLGF SLSPQELPSS AAAAAGDVSG ADVCFNIPQD WGMRGSELSA LVAEPKLEDF  60
LGGISSYSDH HKAARSNNMN INGAAACYAS SGSSGYQLYH DHPNSLQFAD SVMVASSAGG  120
VHNEHGIMAS TTANGAGTNG GIGLSMIKSW LRSQPAPAQQ EQQRAEGLSL SMNMPLLQAA  180
AAETSLSTSA AQQGSRKENN GSSSAGSGAV VSAGTTSAGA VVVESPAAGR KTADTFGQRT  240
SIYRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQVYLGG YDKEEKAARA YDLAALKYWG  300
PTTTTNFPVD NYEKELEEMK HMTRQEFVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR  360
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS ILDSTAALPV  420
GGTKRLRDAA AADQHYQQRA GGVVSYAAPQ LGGVNETALA YGAPYYHHQT SAAAWPTIAF  480
QAAPQASSGH GHMLYHPYGQ PLMRGWCKQE QEQGQGQQEP DHAVIAAAHS LQDLHHLNLG  540
AGAHDFFSQH AHAMHQQQQQ HGGLGSVDNN GAASLEHSTG SNSVVYNGAA AAGDTNNSYM  600
LPPMSAAAAA GFGLRDQQDE GGKMAYENFL LGAATDGYCG PGRMAATWTP VSVSAAQPVA  660
ATSSGSDMAG AVCHGGAQLF SVWNDDS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g57747.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753602.10.0AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ8LSN21e-132BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2K2DGH00.0A0A2K2DGH0_BRADI; Uncharacterized protein
STRINGBRADI2G57747.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-121AINTEGUMENTA-like 5