PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g54590.1.p
Common NameBRADI_2g54590, LOC100822844
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WOX
Protein Properties Length: 312aa    MW: 34072.2 Da    PI: 10.6196
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g54590.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.26e-1851110357
                       --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        R+t+t+eq e Le l+++  ++psae+++ +A++l     ++ ++V++WFqN +a++++
  Bradi2g54590.1.p  51 ARWTPTQEQRELLEGLYRQgLHTPSAEQIQGIAARLrqhgPVEGKNVFYWFQNYKARQRQ 110
                       7*****************99*****************9999*****************96 PP
2Wus_type_Homeobox97.69.7e-3250112365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RWtPt+eQ ++Le ly++Gl tP++e+iq i+a+L+++G +e+kNVfyWFQN kaR+rq+q
   Bradi2g54590.1.p  50 NARWTPTQEQRELLEGLYRQGLHTPSAEQIQGIAARLRQHGPVEGKNVFYWFQNYKARQRQRQ 112
                        78***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.1E-448115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-751110IPR009057Homeodomain-like
PfamPF000461.4E-1551110IPR001356Homeobox domain
SuperFamilySSF466892.4E-1251116IPR009057Homeodomain-like
PROSITE profilePS500719.83152111IPR001356Homeobox domain
CDDcd000860.0038452106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDILQKHGAD ARNRNNNNQQ APIRLSLSPP GRVPVSPPMS PNSEAALLAN ARWTPTQEQR  60
ELLEGLYRQG LHTPSAEQIQ GIAARLRQHG PVEGKNVFYW FQNYKARQRQ RQRLQGLAYF  120
DREFRRPMPI PVLHRFPSPP ATAPVPLLPA ACNRSEANMY RQPSFFPQTP QAAANATAAH  180
YLQTQPPLLY PGFGNAPALS RYQQPAPNSA GGSGTQQLRG MRFPSASGAA NASSGSGTRD  240
RETLQLFPLQ PTCWQMREKK KKNCSSTGSG SPSPMTPSSS GSASSSFSLE PESPEVPFYD  300
FFGLQSGGRA D*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g54590.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567259.10.0WUSCHEL-related homeobox 5
SwissprotA2WWU74e-47WOX5_ORYSI; WUSCHEL-related homeobox 5
SwissprotQ8LR864e-47WOX5_ORYSJ; WUSCHEL-related homeobox 5
TrEMBLI1HT890.0I1HT89_BRADI; Uncharacterized protein
STRINGBRADI2G54590.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Representative plantOGRP85821116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-23WUSCHEL related homeobox 2