PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g53520.1.p
Common NameBRADI_2g53520, LOC100837676
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 284aa    MW: 29534.2 Da    PI: 7.3115
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g53520.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.52.7e-23111169258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnh 58 
                       +Dg++WrKYGqK+++g ++pr YYrC+++  gC ++++v+rs+++p +  + Y geH++
  Bradi2g53520.1.p 111 EDGFAWRKYGQKDINGCRHPRLYYRCAYRgeGCVATRRVQRSRDEPAAYAVAYYGEHTC 169
                       7***************************9999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-24104170IPR003657WRKY domain
SuperFamilySSF1182903.66E-23105171IPR003657WRKY domain
PROSITE profilePS5081120.908105167IPR003657WRKY domain
SMARTSM007741.8E-30110171IPR003657WRKY domain
PfamPF031063.8E-23111169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MALATPTAVV LELMTMGQQS AAHLGELLRA ASPTTLPGEQ LQNQALAAEI LRCCDRVIAA  60
MSRCHPGAAA KKKRKATDVP GFAAAAGPPA SRRARGGADA RGEVVESGTT EDGFAWRKYG  120
QKDINGCRHP RLYYRCAYRG EGCVATRRVQ RSRDEPAAYA VAYYGEHTCG QGDGAAAAFQ  180
QQAAGTAAAL LPAPTVVVEF GSNNASGLVD VCRDRGSALP PLIPAGSGTS WRGWSSSSSS  240
SSSEVELGAS PSPVMEFLEG SFDWESVVNS LGFGDLPLVA MLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-19111169968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g53520.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567230.10.0probable WRKY transcription factor 70
TrEMBLI1HSW20.0I1HSW2_BRADI; Uncharacterized protein
STRINGBRADI2G53520.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Representative plantOGRP1292445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-20WRKY DNA-binding protein 46