PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g53500.2.p | ||||||||
Common Name | BRADI_2g53500, LOC104583344 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 235aa MW: 25975.5 Da PI: 7.8618 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 26.9 | 9.4e-09 | 93 | 139 | 19 | 59 |
SS-EEEEEE-ST...T---EEEEEE-SS...STTEEEEEEES--SS- CS WRKY 19 efprsYYrCtsa...gCpvkkkversae...dpkvveitYegeHnhe 59 + r YY+C ++ gC++kk+v+++++ ++ itY +eH+++ Bradi2g53500.2.p 93 KRIRYYYKCMYSherGCRAKKQVQQQDNssdHRPMFLITYVNEHTCQ 139 66799****9887799*******987641114569**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 8.5E-7 | 69 | 140 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.8E-9 | 87 | 140 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.9E-11 | 90 | 139 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.3E-11 | 90 | 140 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MALGKDAVEQ LRQELEGGYN LNASLLELLR RPLDWRGQKV AVEMIQGLSQ VLKVSLFMLN 60 PGDSSTAGEV RTAPCPKATT HGGTGKHTPA KDKRIRYYYK CMYSHERGCR AKKQVQQQDN 120 SSDHRPMFLI TYVNEHTCQQ LHPTENISTT NTTARNDHFD PPQHVGTSTE LENKIMAKCL 180 ANVVIGRAAA PSSWSSPASS MLPPPPVEEN MGEMMEIYSY FLCGPPFPPA SAWA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g53500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314630.1 | 1e-158 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A0Q3N1A4 | 1e-177 | A0A0Q3N1A4_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G53500.1 | 1e-157 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13243 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40750.1 | 1e-07 | WRKY DNA-binding protein 54 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g53500.2.p |
Entrez Gene | 104583344 |