PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g53486.1.p
Common NameBRADI_2g53486, LOC100836758
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 266aa    MW: 28733.3 Da    PI: 6.6986
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g53486.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.48.2e-2551112259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+++g+ fpr YYrCt++   gCp+ k+ve+s+ edp ++ ++Y+++H+++
  Bradi2g53486.1.p  51 HDGFQWRKYGQKMIRGNIFPRCYYRCTYHqdhGCPASKHVEQSNsEDPPLFRVIYTNDHTCS 112
                       7***************************98999********985379*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-2535112IPR003657WRKY domain
SuperFamilySSF1182904.84E-2343112IPR003657WRKY domain
SMARTSM007745.4E-3650113IPR003657WRKY domain
PROSITE profilePS5081119.47452109IPR003657WRKY domain
PfamPF031067.5E-2552111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAKSGGSSSS GSFDGANKRP LQDSVGGCAQ EHAKKKTRVG VRTDYTYAPY HDGFQWRKYG  60
QKMIRGNIFP RCYYRCTYHQ DHGCPASKHV EQSNSEDPPL FRVIYTNDHT CSGASEQYCY  120
MASSMQIQQI ADASLRKPAP ETTPAPPLPQ QQQLARRGRA AAYAAAIKQE KDAIVSSLLT  180
VIRGCEVDVV KSEPVHENYG AGACMLSPPV AGGASGLEGS GSSLVSPVAV PAPDDLGLDF  240
MVESLDPCWF EPLDLGWFIE STHPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-1237109169WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g53486.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233534.10.0probable WRKY transcription factor 38 isoform X1
TrEMBLA0A0Q3RB800.0A0A0Q3RB80_BRADI; Uncharacterized protein
STRINGTRIUR3_27575-P11e-103(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-18WRKY DNA-binding protein 55