PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g50120.2.p
Common NameBRADI_2g50120, LOC100843055
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 658aa    MW: 71095.4 Da    PI: 7.5638
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g50120.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.47.4e-25132233199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae++       + +   s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   +
  Bradi2g50120.2.p 132 FCKTLTASDTSTHGGFSVPRRAAEDCfspldyqQ-IR-PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--R 220
                       99****************************9843.43.4569************************************************..3 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++el+++v+r+
  Bradi2g50120.2.p 221 GDDGELKLGVRRA 233
                       489999***9996 PP
2Auxin_resp1111.1e-36258338182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       +a++++++svF+++YnPr ++seF+v+++k++k+l++++++GmRfk+++ +ed++err sG+++gv+++dp+rWp+S+WrsL
  Bradi2g50120.2.p 258 VANSLKHRSVFHICYNPRDAASEFIVPYWKFLKSLNHPFCIGMRFKIQYGSEDVNERR-SGMITGVTEVDPIRWPGSNWRSL 338
                       68999*****************************************************.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-43121271IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-37129233IPR015300DNA-binding pseudobarrel domain
CDDcd100174.20E-22131232No hitNo description
PfamPF023626.8E-23132233IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197132234IPR003340B3 DNA binding domain
SMARTSM010196.9E-23132234IPR003340B3 DNA binding domain
PfamPF065074.7E-30259338IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MGIDLNAADD NRDARAPPPS PTAVCRELWH ACAGPIVALP RRGSKVVYLP QAHLAAAGCG  60
GDVAVALPPH VACRVVDVEL CADPSTDEVY ARLALMAEGE VFERNMEGGR NEGEDDTEDG  120
DGERKSRMLQ MFCKTLTASD TSTHGGFSVP RRAAEDCFSP LDYQQIRPSQ ELVAKDLHGA  180
KWRFRHIYRG QPRRHLLTTG WSSFVNKKKL VSGDAVLFLR GDDGELKLGV RRAIQLKNES  240
LFKAFSSNSS KMNALSAVAN SLKHRSVFHI CYNPRDAASE FIVPYWKFLK SLNHPFCIGM  300
RFKIQYGSED VNERRSGMIT GVTEVDPIRW PGSNWRSLLV RWEDGTDCNS QNRLSPWEIE  360
IVGGSVSIAQ SLPASSSKRT KLCSQSNLDV PTLYGNGCPD SMGTDKLPRV LQGQELMGSG  420
THRVTCSPQQ AGVTEFKCSD GMGFITNTRS CMLSGPTSRL PARNSGFSYQ SVGFGESVGF  480
PEVLQGQEIS QTVPLFQGTV SDTCSAKGRY GLHNMRTSYA VSGGLSSAIQ GRSLSLSTQP  540
PAEMASPLPT VVPQLGLSSK NKDGDANGSQ PEPFGIVKAS TPGDAVKIGP DGRKVARSSC  600
MLFGFSLTEK ILPTEEDCVK EGNHETDCQN PRMLDLFGYG HATPGALHAL CAAPLGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-992336018353Auxin response factor 1
4ldy_B3e-992336018353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g50120.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3548060.0AK354806.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1011H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315553.10.0auxin response factor 3
SwissprotQ5JMM10.0ARFC_ORYSJ; Auxin response factor 3
TrEMBLI1HRN40.0I1HRN4_BRADI; Auxin response factor
STRINGBRADI2G50120.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Representative plantOGRP1291845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-151ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]