PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g48907.1.p
Common NameBRADI_2g48907, LOC100837068
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 290aa    MW: 30564.7 Da    PI: 4.9392
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g48907.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.9e-3178136259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+ dp +v +tY+ eHnh+
  Bradi2g48907.1.p  78 TDEWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSQADPAMVLVTYSYEHNHS 136
                       69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.15972138IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-3074136IPR003657WRKY domain
SuperFamilySSF1182901.16E-2575136IPR003657WRKY domain
SMARTSM007749.9E-3877137IPR003657WRKY domain
PfamPF031064.9E-2679135IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDGEWSEGAV SSGTMSGGEQ KARGDGVSVD SSGPGSAPST TSSPSGKRRS LQKRVVTVPL  60
ADVSAPRPKG VGEGNTPTDE WAWRKYGQKP IKGSPFPRAY YRCSSSKGCP ARKQVERSQA  120
DPAMVLVTYS YEHNHSTAVA NRAQQNRQAQ KPKDQPDHPA KSDDAHQGTA ANVVNDSPPA  180
IEVHDEFKWL YDVVSVTSSS SDVEAADDLL LYGPMFFGKA AVDTLLPDEF GFGGGDAAGG  240
ERSEEDDAMF AGLGELPECA MVFRRHAGDG LAMLGGVKVE QPAEGTAMT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-1753135676Disease resistance protein RRS1
5w3x_D1e-1753135676Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g48907.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568231e-112AK356823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1040G05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232262.10.0probable WRKY transcription factor 65
TrEMBLA0A0Q3R8V20.0A0A0Q3R8V2_BRADI; Uncharacterized protein
STRINGBRADI2G48907.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Representative plantOGRP1436244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-39WRKY DNA-binding protein 65