PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g47730.1.p
Common NameBRADI_2g47730, LOC100837261
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 471aa    MW: 50430.9 Da    PI: 7.7064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g47730.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13330376455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Bradi2g47730.1.p 330 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 376
                       799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-4543225IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.3E-16325391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.047326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-15329380No hitNo description
Gene3DG3DSA:4.10.280.103.7E-16329379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-11330376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSWSDTDAAL FAAVLGKDAA HHLATTPPQL DGPASASASS AELQARLQDL VELGGAWTYG  60
IYWQESHDGA GRPVLGWGDG HCREHDPAAP EDEEAGAANT SLARKRVLLR LHALHGGGEE  120
DEEGADYALR LDRVTGAEMY FLASMYFSFP EDAGGPGRAR ASGRHAWVAV DDPRRPGWCV  180
RASLAQSAGL RTVVFLPCKG GVLELGSVAA VRENPDALRA IQSAFRVDPP TPPNDYMRIF  240
GKDLSRGAQQ TGCDATWAAP LRLGGQAMAA TRPAPKKEVV KAKPAEPSPK RSINFTQQPD  300
AQKQAGGGGD ERRPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR AVVPKISKMD  360
KASLLSDAIA YIQELEARLR TPTSPSVEVK AMQDEVVLRV TTPLDAHPVS GALSAIRDSH  420
LSVVASDMAM AGDAVTHTLV VRSAGPDRLT AETVLAAMSR GMMMSNTPSP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27324405283Transcription factor MYC2
5gnj_B2e-27324405283Transcription factor MYC2
5gnj_E2e-27324405283Transcription factor MYC2
5gnj_F2e-27324405283Transcription factor MYC2
5gnj_G2e-27324405283Transcription factor MYC2
5gnj_I2e-27324405283Transcription factor MYC2
5gnj_M2e-27324405283Transcription factor MYC2
5gnj_N2e-27324405283Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311319RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g47730.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569643.10.0transcription factor bHLH13
TrEMBLI1HQS80.0I1HQS8_BRADI; Uncharacterized protein
STRINGBRADI2G47730.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Representative plantOGRP94301012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.13e-86ABA-inducible BHLH-type transcription factor