PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g45530.1.p
Common NameBRADI_2g45530, LOC100840424
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 301aa    MW: 31944.8 Da    PI: 4.1845
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g45530.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-1998148256
               AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       +++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ ++ a+ +l+g+
  Bradi2g45530.1.p  98 KFRGVRRRP-WGKYAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDSAAIQLRGA 148
                       89*******.**********88.....55*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-2298156IPR016177DNA-binding domain
CDDcd000184.43E-2998157No hitNo description
PfamPF008473.6E-1298147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2998156IPR001471AP2/ERF domain
PROSITE profilePS5103222.99898155IPR001471AP2/ERF domain
SMARTSM003804.5E-3598161IPR001471AP2/ERF domain
PRINTSPR003672.0E-1099110IPR001471AP2/ERF domain
PRINTSPR003672.0E-10121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSRSRTVRIF WDDPDVTDSS GEEESCGGAR RVARMVRELP PAPAPALLVQ AGFTSAGFPE  60
QCILGEDDDQ ARPVGGACTG ARKRSAKGGS AAAAGTNKFR GVRRRPWGKY AAEIRDPWRG  120
VRVWLGTFDT AEEAARVYDS AAIQLRGASA TTNFSTSSEG ATQDPAATGY ESGAESSQAV  180
SSPTSVLRKV PSMSSLAEDR GDDSEAYQGD NGGSSSLAVL EELGEFVPFE DAPVYSSSSF  240
WDFEPQAGFL YAEPSSPDEA SWGDASAGEP WAAAPVQDNN DYFFQDLRDL FPLNPPPAIF  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2287154371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g45530.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-158HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569485.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLI1HQ110.0I1HQ11_BRADI; Uncharacterized protein
STRINGBRADI2G45530.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-30cytokinin response factor 4