PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g44270.1.p
Common NameBRADI_2g44270, LOC100827879
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 293aa    MW: 31150.6 Da    PI: 6.0346
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g44270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.29.2e-25101161259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg +WrKYGqK++++se+p+sY+rCt++   +C + ++v+r+++dp+ +++tY g+H+++
  Bradi2g44270.1.p 101 EDGQSWRKYGQKDIQNSEHPKSYFRCTHKydqKCAALRQVQRCDQDPESFVVTYIGQHTCQ 161
                       8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-2592163IPR003657WRKY domain
PROSITE profilePS5081121.05895163IPR003657WRKY domain
SuperFamilySSF1182902.75E-2398163IPR003657WRKY domain
SMARTSM007747.7E-35100162IPR003657WRKY domain
PfamPF031061.7E-22101161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSMAMEQPTP HELLMGELIK GKDLAARLQG LLGHSPEAGL IVDQILHAFS RAIDAAKPVG  60
SEVQREATCA RKRKAAAAAA RRDTSRRRQS SGFTKVVKNV EDGQSWRKYG QKDIQNSEHP  120
KSYFRCTHKY DQKCAALRQV QRCDQDPESF VVTYIGQHTC QDPHDMAAPP HVDIHQTADG  180
VHAGSHLICF APNAGPASTT TSVTTNQTGI GMDGAAPGSA SGLPILKVEG GDQEEVRSCL  240
TPGSSAVHST AAAAGAGPDQ GDVSSAPQFY EDGAADMGEF FGLEDIFDLD DH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-3396161469OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g44270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566912.10.0probable WRKY transcription factor 70
TrEMBLI1HPN10.0I1HPN1_BRADI; Uncharacterized protein
STRINGBRADI2G44270.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.16e-25WRKY DNA-binding protein 46