PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g44035.1.p
Common NameBRADI_2g44035, LOC100824490
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 339aa    MW: 36653.2 Da    PI: 8.0191
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g44035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.97.5e-27180238259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v++itY  eH h+
  Bradi2g44035.1.p 180 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKMVERSPAKPGVLVITYMAEHCHP 238
                       799***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.056174240IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-27175240IPR003657WRKY domain
SuperFamilySSF1182902.48E-24177240IPR003657WRKY domain
SMARTSM007743.1E-32179239IPR003657WRKY domain
PfamPF031062.4E-22181238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MCARPLLLLR MEHLNDWDLQ AVVRSCSGSG VSSSHPHDYR APAPKSEAEA EADQVKERAA  60
CGPRDQVVAA RGSARAAAKD ASALYELEYL DLDHKPFLLS TTSSSSPQAW ANPDEGRREV  120
MISFPAAAAS TSTSTSGGQT RVPPGRKPGI RSTPRPKRSK KSQLKKVVCE VPVADGGVSS  180
DLWAWRKYGQ KPIKGSPYPR GYYKCSSMKG CMARKMVERS PAKPGVLVIT YMAEHCHPVP  240
TQINALAGTT RHKSNTPTED HPTASPKSRD NNKAGSGNAH EAAKCKLEDD NSEASAMAND  300
ENEFWPMDMA LDDLLAPMDG DLDHVFEEEG VLGRRLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-20161241280Disease resistance protein RRS1
5w3x_D2e-20161241280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g44035.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114161e-140AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706011e-140AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566901.10.0WRKY transcription factor 22
TrEMBLI1HPK50.0I1HPK5_BRADI; Uncharacterized protein
STRINGBRADI2G44035.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Representative plantOGRP1140847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-37WRKY DNA-binding protein 27