PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g42936.1.p | ||||||||
Common Name | BRADI_2g42936 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 163aa MW: 18557.4 Da PI: 11.842 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 9e-14 | 11 | 55 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd +l ++ ++ ++W+++ar m+ gR+ k c++rw+++l Bradi2g42936.1.p 11 GWTAEEDARLEKLATENRFRHWHRVARQMP-GRSHKLCRDRWRDHL 55 6*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 30.1 | 1.1e-09 | 63 | 105 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ +d l++ ++++Gg+ Wk I+r++ Rt +k rw + Bradi2g42936.1.p 63 AFTAADDAELARQHRRHGGR-WKDISRHVH-ARTTRVLKRRWKEL 105 79******************.*********.***********977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.196 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 6.7E-8 | 8 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.88E-19 | 8 | 102 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-11 | 11 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-17 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.63E-9 | 12 | 55 | No hit | No description |
SMART | SM00717 | 1.7E-6 | 60 | 108 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.56 | 62 | 110 | IPR017930 | Myb domain |
CDD | cd00167 | 1.64E-5 | 63 | 106 | No hit | No description |
Pfam | PF13921 | 1.5E-7 | 64 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-10 | 66 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MLIVRLRLRR GWTAEEDARL EKLATENRFR HWHRVARQMP GRSHKLCRDR WRDHLARDLY 60 SRAFTAADDA ELARQHRRHG GRWKDISRHV HARTTRVLKR RWKELLRKKN GAEKMEASTS 120 PTLQHPLADV LAAGLSSCSL GGGPAGDPRL GSLALGFACM AV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-15 | 12 | 109 | 7 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-15 | 12 | 109 | 7 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-15 | 12 | 109 | 7 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 100 | RVLKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g42936.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314259.1 | 1e-113 | transcription factor MYB73-like | ||||
TrEMBL | A0A0Q3J7Z2 | 1e-112 | A0A0Q3J7Z2_BRADI; Uncharacterized protein | ||||
STRING | LPERR07G10060.1 | 6e-55 | (Leersia perrieri) | ||||
STRING | LPERR07G10290.1 | 6e-55 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12569 | 20 | 35 | Representative plant | OGRP10428 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 1e-17 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g42936.1.p |