PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g41540.1.p

Common Name

BRADI_2g41540, LOC100840621

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C3H

Protein Properties

Length: 686aa MW: 72965 Da PI: 5.2203

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g41540.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.9e-06	458	480	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C +far G C Gd C++ H Bradi2g41540.1.p 458 KSKPCTHFAR-GSCLKGDDCPYDH 480 6789****.*********** PP
2	zf-CCCH	20.3	1e-06	486	507	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f+ +G C +Gd+CkF+H+ Bradi2g41540.1.p 486 PCHNFLGNGMCLRGDKCKFSHV 507 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.709	427	454	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.8E-5	428	452	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.51	428	453	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.2E-4	455	481	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.281	456	483	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.2E-5	456	482	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-5	458	481	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.28	484	508	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.71E-6	485	512	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.295	486	509	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
MENALAPAAP ADPLAAGSAA PTTLLLSRRR SHLDSASYRT LSRLFSHFLH LNPSQHAAPA 60 HLGIEPAAAN PIGDASPQGA SAAPKDAEFE QGKDIEEQVA AASTSGVETP AHVVVEAAAG 120 YPIADLDMAS QESAGHEVAG VELVEGLEDM VAEGIACRKT PALVEELGGE AELMGTDEVL 180 RSMEASLEGE IEESAELAVA NDDEHLLLDT MMSKLSGLIG DASGGTMSMQ NCGVSRGEPQ 240 NHGKIAEGVK EFVYGIEEST PVGNSDHQSV DGGGFEEGEI EGDMQTLDAD ESGDSELEAA 300 DDEKLEEDFA TRGSGENESS DHGIRCLNSL SMLGIKGSGD LVLNKEGDIK ADAQMHVPRA 360 QAVGYDEVVE WNETPLHDAE APRPGKRKRI FTEERKAKKT KNKRVKRALQ READGVKRLK 420 LAPIIKPKVV RYCHFYLHGK CQQGNVCKFS HDTTPLTKSK PCTHFARGSC LKGDDCPYDH 480 ELSKYPCHNF LGNGMCLRGD KCKFSHVAPT ADDSSTKDAK KSDASLVSEK LTSKEQNSSQ 540 KISTVHDGEP VASAPTKHYS ILKTLGSISK NAQKASAHMP KGVQFLAFSK GRSDSSILHQ 600 DAPPPGNFVG PQAAEGDKNA QPNRHRSAAR SNENSSKEAS SHPISEQKKT SLSADSIAVL 660 GSVSTQHEVS EASRILQEFL FGAGN*

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

MENALAPAAP ADPLAAGSAA PTTLLLSRRR SHLDSASYRT LSRLFSHFLH LNPSQHAAPA  60
HLGIEPAAAN PIGDASPQGA SAAPKDAEFE QGKDIEEQVA AASTSGVETP AHVVVEAAAG  120
YPIADLDMAS QESAGHEVAG VELVEGLEDM VAEGIACRKT PALVEELGGE AELMGTDEVL  180
RSMEASLEGE IEESAELAVA NDDEHLLLDT MMSKLSGLIG DASGGTMSMQ NCGVSRGEPQ  240
NHGKIAEGVK EFVYGIEEST PVGNSDHQSV DGGGFEEGEI EGDMQTLDAD ESGDSELEAA  300
DDEKLEEDFA TRGSGENESS DHGIRCLNSL SMLGIKGSGD LVLNKEGDIK ADAQMHVPRA  360
QAVGYDEVVE WNETPLHDAE APRPGKRKRI FTEERKAKKT KNKRVKRALQ READGVKRLK  420
LAPIIKPKVV RYCHFYLHGK CQQGNVCKFS HDTTPLTKSK PCTHFARGSC LKGDDCPYDH  480
ELSKYPCHNF LGNGMCLRGD KCKFSHVAPT ADDSSTKDAK KSDASLVSEK LTSKEQNSSQ  540
KISTVHDGEP VASAPTKHYS ILKTLGSISK NAQKASAHMP KGVQFLAFSK GRSDSSILHQ  600
DAPPPGNFVG PQAAEGDKNA QPNRHRSAAR SNENSSKEAS SHPISEQKKT SLSADSIAVL  660
GSVSTQHEVS EASRILQEFL FGAGN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g41540.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024315193.1	0.0	zinc finger CCCH domain-containing protein 7
Swissprot	Q657B3	0.0	C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBL	I1HNR5	0.0	I1HNR5_BRADI; Uncharacterized protein
STRING	BRADI2G41540.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8838	37	43
Representative plant	OGRP8161	12	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	4e-06	C3H family protein

Link Out ? help Back to Top
Phytozome	Bradi2g41540.1.p
Entrez Gene	100840621

Publications ? help Back to Top
Noller B,Fischer I Photodissociation dynamics of the 2-propyl radical, C3H7. J Chem Phys, 2007. 126(14): p. 144302 [PMID:17444707] Ali MA,Dillstrom VT,Lai JY,Violi A Ab initio investigation of the thermal decomposition of n-butylcyclohexane. J Phys Chem A, 2014. 118(6): p. 1067-76 [PMID:24344976]