PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g38247.2.p
Common NameBRADI_2g38247, LOC100836455
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 600aa    MW: 63827.2 Da    PI: 8.1292
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g38247.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93e-07252273526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+ f+++G C+ Gd C +aHg
  Bradi2g38247.2.p 252 PCPEFRKGGSCRKGDGCEYAHG 273
                       8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.02E-563142IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-764146IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029711.47964134IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.04599134IPR002110Ankyrin repeat
PROSITE profilePS5010312.85247275IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4247274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4252275IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4252273IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287283307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MCSGTRKPTA PPPPRDSAEL LMELAAADDV VGFRQAVEED KACIDGAGLW YGPSAAVGRR  60
LGMESRTPAM VAALYGSTGV LAYALSAAPR EACRASPTDG ATALHMAAAG GAAGAVAATH  120
LLLAAGASTE ALSASGLRAG DLLPRAAGPA DKPLRVLLKS PAVSPSSSPK KSASPPAAMA  180
MAQEPRKEYP PDLTLPDLKS GLFSTDEFRM YSFKVKPCSR AYSHDWTECP FVHPGENARR  240
RDPRRYSYSC VPCPEFRKGG SCRKGDGCEY AHGVFECWLH PAQYRTRLCK DEVGCARRIC  300
FFAHKRDELR AVNPSAVSVG MQPSSPRSSP PNGMDMGMLN PAWPSSPASS RLKTARELDF  360
DLEMLALDQY QQKLFDKVSN AASPRANWGA ANGGLGSPHA VAQAPPRNMP DYSDLLGSMD  420
TAMLSQLHAL SLKQAGDMSP YSSLPDTQLH MPTSPMVGAN TSFGLDHSMA KAIMSSRASA  480
FAKRSQSFID RGARAPAARS LMSPATMGEP SMLTDWGSPS GNNMDWGSPS GKLDWGVQGD  540
ELHKFRKSAS FGFRAQSAMP VASQATQAEP DVSWVNSLVK DGHSGDHFAQ WLEQEQMVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g38247.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3545650.0AK354565.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1008I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569054.10.0zinc finger CCCH domain-containing protein 33
SwissprotQ688R30.0C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLI1HMN10.0I1HMN1_BRADI; Uncharacterized protein
STRINGBRADI2G38247.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-119C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]