PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g37800.13.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 478aa    MW: 52762.9 Da    PI: 7.0615
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g37800.13.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17164213155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Bradi2g37800.13.p 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213
                        78*******************......55************************997 PP
2AP240.47.4e-13256306155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  Bradi2g37800.13.p 256 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 306
                        89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.82E-16164222IPR016177DNA-binding domain
PfamPF008475.4E-9164213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-17165222IPR001471AP2/ERF domain
CDDcd000189.75E-11165223No hitNo description
PROSITE profilePS5103217.794165221IPR001471AP2/ERF domain
SMARTSM003803.3E-32165227IPR001471AP2/ERF domain
CDDcd000188.07E-24256316No hitNo description
SuperFamilySSF541711.11E-16256315IPR016177DNA-binding domain
PfamPF008475.6E-8256306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15257314IPR001471AP2/ERF domain
SMARTSM003801.8E-31257320IPR001471AP2/ERF domain
PROSITE profilePS5103215.277257314IPR001471AP2/ERF domain
PRINTSPR003675.0E-6258269IPR001471AP2/ERF domain
PRINTSPR003675.0E-6296316IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MELDLNVEEK LPMAAAARSE SGTSESSVLN GETSAAAEEG SSSTPPPPMR AALEFSILRA  60
EGENDVGDED EEEEATPSPP WPPLQQQLVT RELFPSAMAA GSGPPPQQHW AELGFFRPPP  120
PQPVDVRFLQ HAHAPPPGPP PPPPPAAQPP PAKKSRRGPR SRSSQYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF NLSDYEDDMK QMKGLSKEEF  240
VHVLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK YIYLGLFDNE VEAARAYDKA  300
AIKCNGREAV TNFEPSTYEG ELLTEVTSEG ADVDLNLSIS QPASQSPKRD KNSHGLQLHH  360
GSLQGSEVKR AKIDAPSELA ALPHRQYPLL AEHPPIWPGQ SYPIFLNNEG AAREQHIRRP  420
EVGIGGVPSW AWRHHQDSPK LPPRQLPPPP HRPHSGLTRW LHHRLQATTT AESEATL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g37800.13.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231785.10.0floral homeotic protein APETALA 2 isoform X1
SwissprotB8AXC31e-176AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2K2DCG10.0A0A2K2DCG1_BRADI; Uncharacterized protein
STRINGBRADI2G37800.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-97related to AP2.7