PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g37800.12.p | ||||||||
Common Name | BRADI_2g37800, LOC100828894 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 479aa MW: 52012.9 Da PI: 7.2938 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6e-17 | 164 | 213 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Bradi2g37800.12.p 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.82E-16 | 164 | 222 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.5E-9 | 164 | 213 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-32 | 165 | 227 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-17 | 165 | 222 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.61E-11 | 165 | 223 | No hit | No description |
PROSITE profile | PS51032 | 17.794 | 165 | 221 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.17E-12 | 256 | 301 | No hit | No description |
SuperFamily | SSF54171 | 2.09E-6 | 256 | 300 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.7E-13 | 257 | 305 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MELDLNVEEK LPMAAAARSE SGTSESSVLN GETSAAAEEG SSSTPPPPMR AALEFSILRA 60 EGENDVGDED EEEEATPSPP WPPLQQQLVT RELFPSAMAA GSGPPPQQHW AELGFFRPPP 120 PQPVDVRFLQ HAHAPPPGPP PPPPPAAQPP PAKKSRRGPR SRSSQYRGVT FYRRTGRWES 180 HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF NLSDYEDDMK QMKGLSKEEF 240 VHVLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK AYDKAAIKCN GREAVTNFEP 300 STYEGELLTE VTSEGADVDL NLSISQPASQ SPKRDKNSHG LQLHHGSLQG SEVKRAKIDA 360 PSELAALPHR QYPLLAEHPP IWPGQSYPIF LNNEGAAREQ HIRRPEVGIG GVPSWAWRVS 420 HPPPTLPLPL FSSSSSSSAA ASSGFSKTAT TTAAPAATPA SFRFDPMAPS SSSSYHHR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g37800.12.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755092.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
Swissprot | B8AXC3 | 1e-164 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | I1HMI0 | 0.0 | I1HMI0_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G37800.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.2 | 1e-87 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g37800.12.p |
Entrez Gene | 100828894 |