PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g37650.1.p
Common NameBRADI_2g37650, LOC100842843
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WOX
Protein Properties Length: 276aa    MW: 29364 Da    PI: 8.0238
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g37650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.4e-201978357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Bradi2g37650.1.p 19 TRWCPTAEQLMVLEEMYRGgLRTPNASQIQQITAHLahygRIEGKNVFYWFQNHKARDRQ 78
                      8*****************99*************************************996 PP
2Wus_type_Homeobox117.37e-381879364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +tRW+Pt+eQ+++Lee+y+ GlrtPn+++iq+ita+L++yG+ie+kNVfyWFQN+kaR+rqk
   Bradi2g37650.1.p 18 TTRWCPTAEQLMVLEEMYRGGLRTPNASQIQQITAHLAHYGRIEGKNVFYWFQNHKARDRQK 79
                       79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.7821479IPR001356Homeobox domain
SMARTSM003893.6E-41683IPR001356Homeobox domain
SuperFamilySSF466894.15E-101782IPR009057Homeodomain-like
CDDcd000864.13E-41979No hitNo description
PfamPF000461.8E-171978IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-71978IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MPAAAAVAAV SSAAATGTTR WCPTAEQLMV LEEMYRGGLR TPNASQIQQI TAHLAHYGRI  60
EGKNVFYWFQ NHKARDRQKL RRRLCMTHHL LSCAAAAAAV QQAQHHHYYA AAAAAGQFLG  120
GPAGGGAGHP MAQQQQQQYY SAASAMACPA GGFDQHHYQL LPASPMAAAC YPAQLQPSSR  180
CAGGVSPVPA PAQPNQFLQY QQQGGGSPEF SLGRLGSFGV VVDQEEADTC RSGYDYQQQL  240
AAARMEAAET TSFCRPPLKT LELFPGASVK DEQLA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g37650.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401842e-71BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269462e-71KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566641.30.0putative WUSCHEL-related homeobox 2
TrEMBLI1HMF90.0I1HMF9_BRADI; Uncharacterized protein
STRINGBRADI2G37650.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Representative plantOGRP55801121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-39WOX family protein