PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g37430.1.p | ||||||||
Common Name | BRADI_2g37430, LOC100822121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 20694.8 Da PI: 8.3439 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00042 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H Bradi2g37430.1.p 48 FVCKTCDRVFPSFQALGGHRASH 70 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.42E-8 | 46 | 110 | No hit | No description |
Pfam | PF13912 | 1.7E-12 | 47 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 48 | 70 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.7E-9 | 88 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.559 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.9 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MMKRLFEEKE MARVLLLVSS RGGQAMPMPM PVCGRGDRAL GAPAERAFVC KTCDRVFPSF 60 QALGGHRASH KKPRLDGDGG DLAKPKLHGC SVCGLEFAVG QALGGHMRRH RAAAMASPPT 120 SPPAPETKTF KNHGGVKRGL VWLDLNHPPC GEDSDFGCGS DADGGECGRD MAAAAKLTFH 180 QFLDTGTMAV DCVGY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g37430.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968333 | 2e-71 | EU968333.1 Zea mays clone 319090 ZFP16-1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569008.1 | 1e-141 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A0Q3R2P2 | 1e-139 | A0A0Q3R2P2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G37430.1 | 1e-139 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 3e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g37430.1.p |
Entrez Gene | 100822121 |