PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g31887.6.p
Common NameBRADI_2g31887, LOC100840729
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 926aa    MW: 102503 Da    PI: 5.5757
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g31887.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.6e-185096148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd++l +av+ + g++Wk+Ia+++   Rt+ qc +rwqk+l
  Bradi2g31887.6.p 50 KGNWTLEEDDILRKAVQTYNGKNWKKIAECFR-DRTDVQCLHRWQKVL 96
                      79******************************.************986 PP
2Myb_DNA-binding60.53.5e-19102148148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+W++eEd+++++ v+++G++ W+tIa+ ++ gR +kqc++rw+++l
  Bradi2g31887.6.p 102 KGPWSKEEDDIIIEMVNEHGPKKWSTIAQALP-GRIGKQCRERWHNHL 148
                       79******************************.*************97 PP
3Myb_DNA-binding54.42.8e-17154196145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       r++WT+eE+ +l++a++ +G++ W+  +++++ gRt++ +k++w+
  Bradi2g31887.6.p 154 RDAWTQEEEIRLIQAHQAYGNK-WAELSKYLP-GRTDNAIKNHWH 196
                       789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1434596IPR017930Myb domain
SuperFamilySSF466896.9E-1848110IPR009057Homeodomain-like
SMARTSM007173.9E-164998IPR001005SANT/Myb domain
PfamPF002492.1E-155096IPR001005SANT/Myb domain
CDDcd001675.86E-145296No hitNo description
Gene3DG3DSA:1.10.10.606.0E-2352113IPR009057Homeodomain-like
PROSITE profilePS5129431.8597152IPR017930Myb domain
SuperFamilySSF466891.47E-3199195IPR009057Homeodomain-like
SMARTSM007173.0E-18101150IPR001005SANT/Myb domain
CDDcd001678.87E-16104148No hitNo description
PfamPF139213.4E-18105165No hitNo description
Gene3DG3DSA:1.10.10.609.0E-27114155IPR009057Homeodomain-like
SMARTSM007171.0E-15153201IPR001005SANT/Myb domain
PROSITE profilePS5129419.975153203IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-22156202IPR009057Homeodomain-like
CDDcd001679.75E-12156196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MTSDKGRTTK KPAEVSASAL PPSDEEASSA VQKRRLPNGR KTGPARRSTK GNWTLEEDDI  60
LRKAVQTYNG KNWKKIAECF RDRTDVQCLH RWQKVLNPEL VKGPWSKEED DIIIEMVNEH  120
GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP GINRDAWTQE EEIRLIQAHQ AYGNKWAELS  180
KYLPGRTDNA IKNHWHSSVK KKFESYRAEG LLAQLKGLPP VVYPTSLTVD SSSAMIQQNS  240
EGSGLNAVLE VEDSSEFSQS SLANVSCSQV KHVDAALGCH LQVNFCDERA DDSYSLGQEA  300
CYTNTNNVAS ALPETHHQLS ISENDLDKHL QQDFSEEMDL DIGEVPNSSV FTDSQASKEL  360
FQHTQVISML PTVSGYEHNT NATSEADFDN KKGLQSELWE DISFQGILSA PDSISADSFL  420
SPNCQRGLYS VEAAKNFEES LYPLHTFNSS SMTSSAHLQS SATSLPSSFI SSGSASCTPG  480
AKFETNGIPV SLESITCQDV PSDMPIPESR KQQPTDVEQS SLEHTTMGRE ASPIHGESVV  540
GQKKHSEALC YEPPCFPSVE VPFVSCDLLS SSDLPEYSPL GIRELMRSSM NFSTPIRLWS  600
SPTRDMSSDA VLKSAAKSFI CTPSIMKKRQ RELSSPTPDI KFAKKIGAEK DCGNSGMSST  660
RTERSFMDVI EDELLDFISH QNEENLKETT HQGINEENTK RNTLEEGKRC STMNKDTTCD  720
ALSTGILTES NANSLSPPKD VKNPGIQKLN TTAKSLSKEI ISSRSKPTNL VVEKSSPYIN  780
ADYQYVNILA DTPGIKRGLE SPSAWKSPLF TNFQDGFFMS PAGRTFDALG LVKQINEQNA  840
PALEEAHEVL ACGRPQNPCS KENSNKENIE QTIIREHVTS NQPSTVMAEA RILDYNECTT  900
PVKKKEECSI FQRSPTSSYL LKNVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-64502026158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-64502026158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g31887.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231587.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_010231588.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_024315406.10.0transcription factor MYB3R-1 isoform X1
TrEMBLI1HKU00.0I1HKU0_BRADI; Uncharacterized protein
STRINGBRADI2G31887.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.21e-104myb domain protein 3r-4