PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g30530.1.p | ||||||||
Common Name | BRADI_2g30530, LOC100832754 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 19617.5 Da PI: 10.1663 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.4 | 9e-19 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rienk r vtfskR+ g+ KK +E+ vLC +++a++ +s+ gk++ + Bradi2g30530.1.p 16 RIENKESRLVTFSKRKSGLWKKGSEIAVLCRVRIALLAISEAGKVFAF 63 9********************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-19 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.89 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.93E-21 | 8 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-17 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-18 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-17 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-17 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MGEKKTAGKR SIRIQRIENK ESRLVTFSKR KSGLWKKGSE IAVLCRVRIA LLAISEAGKV 60 FAFGSPSVDA VLGGDAGAVP ADDGAGWEAV EALYRETEGK VREVAAESAR MDAVGEKVRQ 120 AQAQAGKRFW FEVDVEALGA EELPVFAMAL QRLRENVGRR IEFCLHSAAA AKVGQNRAPF 180 S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g30530.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469342 | 0.0 | KF469342.1 Brachypodium distachyon MADS-box transcription factor 48 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288328.1 | 1e-126 | agamous-like MADS-box protein AGL62-like | ||||
TrEMBL | A0A2K2DB89 | 1e-125 | A0A2K2DB89_BRADI; Uncharacterized protein | ||||
TrEMBL | I1HKJ1 | 1e-125 | I1HKJ1_BRADI; MADS-box transcription factor 48 | ||||
STRING | BRADI2G30530.1 | 1e-125 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2833 | 30 | 88 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29962.1 | 3e-18 | AGAMOUS-like 64 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g30530.1.p |
Entrez Gene | 100832754 |
Publications ? help Back to Top | |||
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