PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g27040.1.p
Common NameBRADI_2g27040, LOC104582684
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 358aa    MW: 39823.9 Da    PI: 9.86
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g27040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.22.7e-13126205190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn Y+ e+GF vr +ks+ + + +   +++ vCs++gk+ +e+ +         + rtgC+a +++ ++ d+ w+v + ++e nH+l+
  Bradi2g27040.1.p 126 DFYNLYSWEIGFGVRYAKSRLNVHRK-KCMQEIVCSCSGKPLKENMR---------SARTGCTALIRLLRSADNGWYVCEHREERNHPLS 205
                       6*****************99995555.77899********9997655.........9*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575134No hitNo description
PfamPF031016.3E-10126205IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSLWKIPAME LLNRYVQWRN RFLALVLMLS AIGCPMAEKK HGESRMASWK PDMLMAEMKQ  60
RCLGGRRDPG SFCRASIGNA PEERKPNPNK QSALELSIRG YAERRSGVVV APAVGTTFDS  120
LQEAYDFYNL YSWEIGFGVR YAKSRLNVHR KKCMQEIVCS CSGKPLKENM RSARTGCTAL  180
IRLLRSADNG WYVCEHREER NHPLSNTCGE KLHWQSHRHI DPYTKELVRH LRENNVSLGK  240
VYSIIGSFFG SLENVPFTKR SLKTLCGKIS REQSDNDAGK IGHPVLSFSP SCHTAAAAAS  300
PPAPLPISEA SSAAAAAMAF EKIKVANPIV EMDSQIPLPL LRQIDLSRGH GAVRLSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g27040.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231467.10.0uncharacterized protein LOC104582684 isoform X2
TrEMBLA0A0Q3K6T20.0A0A0Q3K6T2_BRADI; Uncharacterized protein
STRINGBRADI2G27040.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.14e-12FAR1-related sequence 6